One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m23/peak-motifs_local_words_7nt_m23_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m23_shift2 ; 55 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m23_shift2 (local_words_7nt_m23local_words_7nt_m23)				; local_words_7nt_m23 (local_words_7nt_m23local_words_7nt_m23); m=0 (reference); ncol1=13; shift=2; ncol=16; --ssACASCTGTTsy- ; Alignment reference a 0 0 1191 1329 4048 26 5213 155 68 38 7 31 45 916 838 0 c 0 0 1334 1824 528 5254 26 3687 5145 11 25 432 545 1821 1948 0 g 0 0 1537 1500 561 34 27 1354 40 8 5277 81 380 1465 1036 0 t 0 0 1259 668 184 7 55 125 68 5264 12 4777 4351 1119 1499 0
MA0499.2_shift2 (MYOD1)				; local_words_7nt_m23 versus MA0499.2 (MYOD1); m=1/54; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.872177; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0
MA1620.1_shift2 (Ptf1a(var.3))				; local_words_7nt_m23 versus MA1620.1 (Ptf1a(var.3)); m=2/54; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.871747; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0
MA0745.2_shift2 (SNAI2)				; local_words_7nt_m23 versus MA0745.2 (SNAI2); m=3/54; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.868128; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0
MA1621.1_shift1 (Rbpjl)				; local_words_7nt_m23 versus MA1621.1 (Rbpjl); m=4/54; ncol2=14; w=13; offset=-1; strand=D; shift=1; score=0.861479; -svmaCACCTGtsyc- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0
MA0832.1_rc_shift1 (Tcf21_rc)				; local_words_7nt_m23 versus MA0832.1_rc (Tcf21_rc); m=5/54; ncol2=14; w=13; offset=-1; strand=R; shift=1; score=0.800404; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0
MA1641.1_rc_shift2 (MYF5_rc)				; local_words_7nt_m23 versus MA1641.1_rc (MYF5_rc); m=6/54; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.795822; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0
MA1619.1_shift2 (Ptf1a(var.2))				; local_words_7nt_m23 versus MA1619.1 (Ptf1a(var.2)); m=7/54; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.787688; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0
MA0830.2_shift2 (TCF4)				; local_words_7nt_m23 versus MA0830.2 (TCF4); m=8/54; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.765981; --cggCACCTGccss- ; cor=; Ncor= a 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 c 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 g 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 t 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0
MA1631.1_shift2 (ASCL1(var.2))				; local_words_7nt_m23 versus MA1631.1 (ASCL1(var.2)); m=9/54; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.757386; --cdgCACCTGCysc- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0
MA1618.1_shift2 (Ptf1a)				; local_words_7nt_m23 versus MA1618.1 (Ptf1a); m=10/54; ncol2=13; w=13; offset=0; strand=D; shift=2; score=0.734166; --dmaCAGATGttkh- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0
MA1105.2_rc_shift3 (GRHL2_rc)				; local_words_7nt_m23 versus MA1105.2_rc (GRHL2_rc); m=11/54; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.721371; ---maAACCTGTTyt- ; cor=; Ncor= a 0 0 0 13946.0 17515.0 36906.0 36921.0 625.0 1247.0 5826.0 320.0 1260.0 1618.0 6264.0 8493.0 0 c 0 0 0 10536.0 7961.0 1220.0 748.0 39624.0 37226.0 485.0 609.0 2841.0 2646.0 10776.0 9161.0 0 g 0 0 0 8528.0 9341.0 2000.0 2331.0 987.0 581.0 1543.0 40446.0 712.0 1147.0 6996.0 9741.0 0 t 0 0 0 8868.0 7061.0 1752.0 1878.0 642.0 2824.0 34024.0 503.0 37065.0 36467.0 17842.0 14483.0 0
MA1485.1_rc_shift1 (FERD3L_rc)				; local_words_7nt_m23 versus MA1485.1_rc (FERD3L_rc); m=12/54; ncol2=14; w=13; offset=-1; strand=R; shift=1; score=0.720421; -GTrACAGCTGkyrC- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0
MA0500.2_shift2 (MYOG)				; local_words_7nt_m23 versus MA0500.2 (MYOG); m=13/54; ncol2=12; w=12; offset=0; strand=D; shift=2; score=0.719534; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0
MA1642.1_rc_shift2 (NEUROG2(var.2)_rc)				; local_words_7nt_m23 versus MA1642.1_rc (NEUROG2(var.2)_rc); m=14/54; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.718262; --brCCATCTGtyyy- ; cor=; Ncor= a 0 0 7184.0 9704.0 4904.0 484.0 32515.0 275.0 2806.0 159.0 237.0 1750.0 4721.0 8378.0 7535.0 0 c 0 0 8709.0 7581.0 24998.0 33422.0 323.0 418.0 30392.0 301.0 317.0 8039.0 11114.0 10123.0 10813.0 0 g 0 0 9034.0 10441.0 2966.0 205.0 904.0 952.0 793.0 211.0 33559.0 8154.0 6467.0 6843.0 7353.0 0 t 0 0 9464.0 6665.0 1523.0 280.0 649.0 32746.0 400.0 33720.0 278.0 16448.0 12089.0 9047.0 8690.0 0
MA0521.1_rc_shift2 (Tcf12_rc)				; local_words_7nt_m23 versus MA0521.1_rc (Tcf12_rc); m=15/54; ncol2=11; w=11; offset=0; strand=R; shift=2; score=0.714174; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0
MA1123.2_rc_shift2 (TWIST1_rc)				; local_words_7nt_m23 versus MA1123.2_rc (TWIST1_rc); m=16/54; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.706279; --avaCATCTGGwwt- ; cor=; Ncor= a 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 0 c 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 0 g 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 0 t 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0 0
MA0744.2_rc_shift2 (SCRT2_rc)				; local_words_7nt_m23 versus MA0744.2_rc (SCRT2_rc); m=17/54; ncol2=16; w=13; offset=0; strand=R; shift=2; score=0.698237; --waccACCTGTTGmw ; cor=; Ncor= a 0 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 c 0 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 g 0 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 t 0 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0
MA0820.1_shift3 (FIGLA)				; local_words_7nt_m23 versus MA0820.1 (FIGLA); m=18/54; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.697399; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0
MA0665.1_shift3 (MSC)				; local_words_7nt_m23 versus MA0665.1 (MSC); m=19/54; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.695106; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0
MA0743.2_rc_shift2 (SCRT1_rc)				; local_words_7nt_m23 versus MA0743.2_rc (SCRT1_rc); m=20/54; ncol2=16; w=13; offset=0; strand=R; shift=2; score=0.694952; --wacCACCTGTTGmw ; cor=; Ncor= a 0 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 c 0 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 g 0 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 t 0 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0
MA0667.1_shift3 (MYF6)				; local_words_7nt_m23 versus MA0667.1 (MYF6); m=21/54; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.684107; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0
MA0103.3_shift3 (ZEB1)				; local_words_7nt_m23 versus MA0103.3 (ZEB1); m=22/54; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.683015; ---ssCACCTGsss-- ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0
MA1559.1_rc_shift3 (SNAI3_rc)				; local_words_7nt_m23 versus MA1559.1_rc (SNAI3_rc); m=23/54; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.675538; ---trCACCTGyt--- ; cor=; Ncor= a 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 c 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 g 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 t 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0
MA0783.1_rc_shift2 (PKNOX2_rc)				; local_words_7nt_m23 versus MA0783.1_rc (PKNOX2_rc); m=24/54; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.674667; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; local_words_7nt_m23 versus MA1467.1_rc (ATOH1(var.2)_rc); m=25/54; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.673436; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0
MA0091.1_rc_shift3 (TAL1::TCF3_rc)				; local_words_7nt_m23 versus MA0091.1_rc (TAL1::TCF3_rc); m=26/54; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.657992; ---AmCAKMTGkTck- ; cor=; Ncor= a 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 c 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 g 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 t 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; local_words_7nt_m23 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=27/54; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.649947; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0
MA1558.1_rc_shift3 (SNAI1_rc)				; local_words_7nt_m23 versus MA1558.1_rc (SNAI1_rc); m=28/54; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.648225; ---yrCACCTGyh--- ; cor=; Ncor= a 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 c 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 g 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 t 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0
MA0797.1_rc_shift2 (TGIF2_rc)				; local_words_7nt_m23 versus MA0797.1_rc (TGIF2_rc); m=29/54; ncol2=12; w=12; offset=0; strand=R; shift=2; score=0.647125; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0
MA1648.1_shift3 (TCF12(var.2))				; local_words_7nt_m23 versus MA1648.1 (TCF12(var.2)); m=30/54; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.640787; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0
MA0522.3_shift3 (TCF3)				; local_words_7nt_m23 versus MA0522.3 (TCF3); m=31/54; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.634993; ---svCACCTGCss-- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0
MA0691.1_rc_shift3 (TFAP4_rc)				; local_words_7nt_m23 versus MA0691.1_rc (TFAP4_rc); m=32/54; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.634956; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0
MA1109.1_rc_shift1 (NEUROD1_rc)				; local_words_7nt_m23 versus MA1109.1_rc (NEUROD1_rc); m=33/54; ncol2=13; w=12; offset=-1; strand=R; shift=1; score=0.61349; -syrCCATCTGtyc-- ; cor=; Ncor= a 0 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 c 0 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 g 0 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 t 0 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0
MA0816.1_shift3 (Ascl2)				; local_words_7nt_m23 versus MA0816.1 (Ascl2); m=34/54; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.608261; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0
MA0819.1_rc_shift3 (CLOCK_rc)				; local_words_7nt_m23 versus MA0819.1_rc (CLOCK_rc); m=35/54; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.59927; ---raCACGTGTt--- ; cor=; Ncor= a 0 0 0 174.0 429.0 9.0 429.0 0.0 28.0 0.0 2.0 13.0 75.0 0 0 0 c 0 0 0 39.0 110.0 429.0 5.0 429.0 0.0 15.0 2.0 89.0 93.0 0 0 0 g 0 0 0 128.0 152.0 3.0 5.0 0.0 429.0 5.0 429.0 85.0 35.0 0 0 0 t 0 0 0 89.0 1.0 0.0 3.0 40.0 16.0 429.0 11.0 429.0 226.0 0 0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; local_words_7nt_m23 versus MA1100.2_rc (ASCL1_rc); m=36/54; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.594629; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0
MA1570.1_rc_shift3 (TFAP4(var.2)_rc)				; local_words_7nt_m23 versus MA1570.1_rc (TFAP4(var.2)_rc); m=37/54; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.592712; ---amCAyrTGdt--- ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 0 0 0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 0 0 0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 0 0 0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0 0 0 0
MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)				; local_words_7nt_m23 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=38/54; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.572179; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0
MA1638.1_rc_shift3 (HAND2_rc)				; local_words_7nt_m23 versus MA1638.1_rc (HAND2_rc); m=39/54; ncol2=10; w=10; offset=1; strand=R; shift=3; score=0.555801; ---rvCATCTGkt--- ; cor=; Ncor= a 0 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 0 c 0 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 0 g 0 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 0 t 0 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0 0
MA0807.1_rc_shift2 (TBX5_rc)				; local_words_7nt_m23 versus MA0807.1_rc (TBX5_rc); m=40/54; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.551072; --TmACACCT------ ; cor=; Ncor= a 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 c 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 g 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 t 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0
MA0806.1_rc_shift2 (TBX4_rc)				; local_words_7nt_m23 versus MA0806.1_rc (TBX4_rc); m=41/54; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.544615; --TcACACCT------ ; cor=; Ncor= a 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 0 0 0 c 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 0 0 0 g 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 0 0 0 t 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0 0 0 0
MA0048.2_shift3 (NHLH1)				; local_words_7nt_m23 versus MA0048.2 (NHLH1); m=42/54; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.539486; ---cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0
MA0100.3_shift3 (MYB)				; local_words_7nt_m23 versus MA0100.3 (MYB); m=43/54; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.539442; ---mbCAACTGhm--- ; cor=; Ncor= a 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 0 c 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 0 g 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 0 t 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0 0
MA0803.1_rc_shift2 (TBX15_rc)				; local_words_7nt_m23 versus MA0803.1_rc (TBX15_rc); m=44/54; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.534367; --TCACACCT------ ; cor=; Ncor= a 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 0 0 c 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 0 0 g 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 0 0 t 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0 0 0
MA0805.1_rc_shift2 (TBX1_rc)				; local_words_7nt_m23 versus MA0805.1_rc (TBX1_rc); m=45/54; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.522166; --TCACACCT------ ; cor=; Ncor= a 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 0 0 c 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 0 0 g 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 0 0 t 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0 0 0
MA0801.1_rc_shift2 (MGA_rc)				; local_words_7nt_m23 versus MA0801.1_rc (MGA_rc); m=46/54; ncol2=8; w=8; offset=0; strand=R; shift=2; score=0.510235; --TCACACCT------ ; cor=; Ncor= a 0 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 0 0 0 0 0 c 0 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 0 0 0 0 0 g 0 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 0 0 0 0 0 t 0 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0 0 0 0 0 0
MA1567.1_rc_shift1 (TBX6_rc)				; local_words_7nt_m23 versus MA1567.1_rc (TBX6_rc); m=47/54; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.488751; -tTmACACcty----- ; cor=; Ncor= a 0 2330.0 713.0 5964.0 11087.0 12.0 11087.0 0.0 1058.0 2157.0 2456.0 0 0 0 0 0 c 0 2141.0 2251.0 11087.0 320.0 11087.0 0.0 11087.0 11087.0 3347.0 4003.0 0 0 0 0 0 g 0 2066.0 652.0 4876.0 3053.0 0.0 1002.0 63.0 2913.0 1173.0 1630.0 0 0 0 0 0 t 0 4550.0 11087.0 1430.0 552.0 14.0 44.0 58.0 1882.0 11087.0 2998.0 0 0 0 0 0
MA1566.1_rc_shift1 (TBX3_rc)				; local_words_7nt_m23 versus MA1566.1_rc (TBX3_rc); m=48/54; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.481472; -ttsACACcty----- ; cor=; Ncor= a 0 578.0 484.0 1112.0 2544.0 0.0 2544.0 0.0 302.0 760.0 497.0 0 0 0 0 0 c 0 620.0 947.0 2544.0 155.0 2544.0 0.0 2544.0 2544.0 1207.0 1003.0 0 0 0 0 0 g 0 586.0 410.0 1471.0 634.0 0.0 735.0 45.0 862.0 481.0 399.0 0 0 0 0 0 t 0 760.0 2544.0 170.0 115.0 0.0 16.0 6.0 427.0 2544.0 644.0 0 0 0 0 0
MA0690.1_rc_shift1 (TBX21_rc)				; local_words_7nt_m23 versus MA0690.1_rc (TBX21_rc); m=49/54; ncol2=10; w=9; offset=-1; strand=R; shift=1; score=0.461344; -TTCACACCTt----- ; cor=; Ncor= a 0 1287.0 0.0 364.0 4395.0 2.0 4395.0 33.0 398.0 146.0 872.0 0 0 0 0 0 c 0 317.0 38.0 4395.0 34.0 4395.0 16.0 4395.0 4395.0 359.0 937.0 0 0 0 0 0 g 0 441.0 0.0 126.0 331.0 0.0 180.0 17.0 239.0 30.0 263.0 0 0 0 0 0 t 0 4395.0 4395.0 80.0 185.0 1.0 6.0 2.0 612.0 4395.0 2322.0 0 0 0 0 0
MA0802.1_rc_shift0 (TBR1_rc)				; local_words_7nt_m23 versus MA0802.1_rc (TBR1_rc); m=50/54; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.451805; tTTCACACCT------ ; cor=; Ncor= a 5846.0 4576.0 205.0 7001.0 34509.0 4.0 34509.0 213.0 4480.0 1433.0 0 0 0 0 0 0 c 4537.0 1488.0 584.0 34509.0 157.0 34509.0 88.0 34509.0 34509.0 3329.0 0 0 0 0 0 0 g 5619.0 2575.0 90.0 2551.0 4742.0 6.0 1759.0 254.0 3255.0 359.0 0 0 0 0 0 0 t 18507.0 25869.0 34509.0 1175.0 2386.0 0.0 39.0 70.0 6880.0 34509.0 0 0 0 0 0 0
MA0688.1_rc_shift0 (TBX2_rc)				; local_words_7nt_m23 versus MA0688.1_rc (TBX2_rc); m=51/54; ncol2=11; w=9; offset=-2; strand=R; shift=0; score= 0.4457; ttTcACACCTw----- ; cor=; Ncor= a 667.0 656.0 120.0 1409.0 3181.0 12.0 3181.0 14.0 353.0 442.0 804.0 0 0 0 0 0 c 590.0 527.0 125.0 3181.0 27.0 3181.0 21.0 3181.0 3181.0 716.0 717.0 0 0 0 0 0 g 446.0 491.0 26.0 1289.0 392.0 0.0 329.0 36.0 519.0 59.0 402.0 0 0 0 0 0 t 1477.0 2525.0 3181.0 310.0 307.0 26.0 0.0 9.0 602.0 3181.0 1258.0 0 0 0 0 0
MA0689.1_rc_shift0 (TBX20_rc)				; local_words_7nt_m23 versus MA0689.1_rc (TBX20_rc); m=52/54; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.432196; yTTCACACCTw----- ; cor=; Ncor= a 59.0 170.0 10.0 82.0 572.0 4.0 572.0 40.0 26.0 24.0 250.0 0 0 0 0 0 c 300.0 53.0 6.0 572.0 11.0 572.0 10.0 572.0 572.0 54.0 121.0 0 0 0 0 0 g 60.0 16.0 1.0 10.0 1.0 1.0 0.0 0.0 34.0 23.0 4.0 0 0 0 0 0 t 154.0 572.0 572.0 48.0 8.0 0.0 0.0 0.0 50.0 572.0 197.0 0 0 0 0 0
MA1647.1_shift6 (PRDM4)				; local_words_7nt_m23 versus MA1647.1 (PRDM4); m=53/54; ncol2=11; w=9; offset=4; strand=D; shift=6; score=0.42945; ------rdCTGTTTCw ; cor=; Ncor= a 0 0 0 0 0 0 1980.0 2041.0 281.0 860.0 293.0 147.0 169.0 195.0 481.0 2111.0 c 0 0 0 0 0 0 1163.0 1012.0 6504.0 286.0 110.0 137.0 405.0 138.0 6353.0 1456.0 g 0 0 0 0 0 0 2553.0 2079.0 316.0 566.0 6813.0 82.0 393.0 111.0 129.0 726.0 t 0 0 0 0 0 0 1559.0 2123.0 154.0 5543.0 39.0 6889.0 6288.0 6811.0 292.0 2962.0
MA0480.1_shift6 (Foxo1)				; local_words_7nt_m23 versus MA0480.1 (Foxo1); m=54/54; ncol2=11; w=9; offset=4; strand=D; shift=6; score=0.429386; ------tsyTGTTTAC ; cor=; Ncor= a 0 0 0 0 0 0 468.0 127.0 87.0 0.0 0.0 0.0 0.0 0.0 1871.0 0.0 c 0 0 0 0 0 0 277.0 1279.0 1406.0 0.0 0.0 0.0 0.0 0.0 157.0 2007.0 g 0 0 0 0 0 0 478.0 752.0 209.0 0.0 2490.0 0.0 0.0 287.0 0.0 0.0 t 0 0 0 0 0 0 1267.0 332.0 788.0 2490.0 0.0 2490.0 2490.0 2203.0 462.0 483.0