One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m28/peak-motifs_local_words_7nt_m28.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m28/peak-motifs_local_words_7nt_m28_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m28_shift0 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m28_shift0 (local_words_7nt_m28local_words_7nt_m28)
; local_words_7nt_m28 (local_words_7nt_m28local_words_7nt_m28); m=0 (reference); ncol1=20; shift=0; ncol=20; smgccCAGCAGCTGTCAcys ; Alignment reference a 192 204 128 103 122 54 680 35 6 744 6 8 8 1 19 20 568 67 149 165 c 230 212 179 461 450 660 27 26 777 7 45 764 5 5 47 700 107 508 264 222 g 219 191 360 152 115 47 23 711 4 8 729 13 5 784 27 40 51 131 158 260 t 151 185 125 76 105 31 62 20 5 33 12 7 774 2 699 32 66 86 221 145

MA1485.1_shift4 (FERD3L)
; local_words_7nt_m28 versus MA1485.1 (FERD3L); m=1/14; ncol2=14; w=14; offset=4; strand=D; shift=4; score=0.540034; ----GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0499.2_shift5 (MYOD1)
; local_words_7nt_m28 versus MA0499.2 (MYOD1); m=2/14; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.529511; -----cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0832.1_rc_shift4 (Tcf21_rc)
; local_words_7nt_m28 versus MA0832.1_rc (Tcf21_rc); m=3/14; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.520172; ----ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0500.2_rc_shift5 (MYOG_rc)
; local_words_7nt_m28 versus MA0500.2_rc (MYOG_rc); m=4/14; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.486145; -----sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0521.1_rc_shift5 (Tcf12_rc)
; local_words_7nt_m28 versus MA0521.1_rc (Tcf12_rc); m=5/14; ncol2=11; w=11; offset=5; strand=R; shift=5; score=0.479425; -----cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1641.1_rc_shift5 (MYF5_rc)
; local_words_7nt_m28 versus MA1641.1_rc (MYF5_rc); m=6/14; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.468301; -----gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift5 (Ptf1a(var.2)_rc)
; local_words_7nt_m28 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/14; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.463158; -----rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA0745.2_shift5 (SNAI2)
; local_words_7nt_m28 versus MA0745.2 (SNAI2); m=8/14; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.455839; -----aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0

MA1467.1_shift6 (ATOH1(var.2))
; local_words_7nt_m28 versus MA1467.1 (ATOH1(var.2)); m=9/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.441305; ------AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0816.1_shift6 (Ascl2)
; local_words_7nt_m28 versus MA0816.1 (Ascl2); m=10/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.428003; ------arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1472.1_shift6 (BHLHA15(var.2))
; local_words_7nt_m28 versus MA1472.1 (BHLHA15(var.2)); m=11/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.42423; ------avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1100.2_shift6 (ASCL1)
; local_words_7nt_m28 versus MA1100.2 (ASCL1); m=12/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.418147; ------rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1635.1_rc_shift6 (BHLHE22(var.2)_rc)
; local_words_7nt_m28 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/14; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.40829; ------csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA0665.1_rc_shift6 (MSC_rc)
; local_words_7nt_m28 versus MA0665.1_rc (MSC_rc); m=14/14; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.406202; ------AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m28_shift0 (local_words_7nt_m28local_words_7nt_m28)				; local_words_7nt_m28 (local_words_7nt_m28local_words_7nt_m28); m=0 (reference); ncol1=20; shift=0; ncol=20; smgccCAGCAGCTGTCAcys ; Alignment reference a 192 204 128 103 122 54 680 35 6 744 6 8 8 1 19 20 568 67 149 165 c 230 212 179 461 450 660 27 26 777 7 45 764 5 5 47 700 107 508 264 222 g 219 191 360 152 115 47 23 711 4 8 729 13 5 784 27 40 51 131 158 260 t 151 185 125 76 105 31 62 20 5 33 12 7 774 2 699 32 66 86 221 145
MA1485.1_shift4 (FERD3L)				; local_words_7nt_m28 versus MA1485.1 (FERD3L); m=1/14; ncol2=14; w=14; offset=4; strand=D; shift=4; score=0.540034; ----GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0
MA0499.2_shift5 (MYOD1)				; local_words_7nt_m28 versus MA0499.2 (MYOD1); m=2/14; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.529511; -----cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0
MA0832.1_rc_shift4 (Tcf21_rc)				; local_words_7nt_m28 versus MA0832.1_rc (Tcf21_rc); m=3/14; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.520172; ----ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0
MA0500.2_rc_shift5 (MYOG_rc)				; local_words_7nt_m28 versus MA0500.2_rc (MYOG_rc); m=4/14; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.486145; -----sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0
MA0521.1_rc_shift5 (Tcf12_rc)				; local_words_7nt_m28 versus MA0521.1_rc (Tcf12_rc); m=5/14; ncol2=11; w=11; offset=5; strand=R; shift=5; score=0.479425; -----cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
MA1641.1_rc_shift5 (MYF5_rc)				; local_words_7nt_m28 versus MA1641.1_rc (MYF5_rc); m=6/14; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.468301; -----gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0
MA1619.1_rc_shift5 (Ptf1a(var.2)_rc)				; local_words_7nt_m28 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/14; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.463158; -----rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0
MA0745.2_shift5 (SNAI2)				; local_words_7nt_m28 versus MA0745.2 (SNAI2); m=8/14; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.455839; -----aygCACCTGTmry-- ; cor=; Ncor= a 0 0 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 c 0 0 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 g 0 0 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 t 0 0 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0
MA1467.1_shift6 (ATOH1(var.2))				; local_words_7nt_m28 versus MA1467.1 (ATOH1(var.2)); m=9/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.441305; ------AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0
MA0816.1_shift6 (Ascl2)				; local_words_7nt_m28 versus MA0816.1 (Ascl2); m=10/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.428003; ------arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0
MA1472.1_shift6 (BHLHA15(var.2))				; local_words_7nt_m28 versus MA1472.1 (BHLHA15(var.2)); m=11/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.42423; ------avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0
MA1100.2_shift6 (ASCL1)				; local_words_7nt_m28 versus MA1100.2 (ASCL1); m=12/14; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.418147; ------rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0
MA1635.1_rc_shift6 (BHLHE22(var.2)_rc)				; local_words_7nt_m28 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/14; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.40829; ------csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0
MA0665.1_rc_shift6 (MSC_rc)				; local_words_7nt_m28 versus MA0665.1_rc (MSC_rc); m=14/14; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.406202; ------AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0