One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m31/peak-motifs_local_words_7nt_m31.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m31/peak-motifs_local_words_7nt_m31_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m31_shift3 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m31_shift3 (local_words_7nt_m31local_words_7nt_m31)
; local_words_7nt_m31 (local_words_7nt_m31local_words_7nt_m31); m=0 (reference); ncol1=18; shift=3; ncol=21; ---srgTGACAGCTGTTCcyk ; Alignment reference a 0 0 0 208 250 99 99 50 801 2 955 10 10 8 6 16 38 81 134 175 221 c 0 0 0 272 173 150 40 71 49 955 2 37 911 4 4 101 89 667 572 281 225 g 0 0 0 257 305 646 121 819 64 4 4 901 30 6 946 33 85 127 83 199 271 t 0 0 0 227 236 69 704 24 50 3 3 16 13 946 8 814 752 89 175 309 247

MA1485.1_rc_shift5 (FERD3L_rc)
; local_words_7nt_m31 versus MA1485.1_rc (FERD3L_rc); m=1/27; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.655695; -----GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0832.1_shift5 (Tcf21)
; local_words_7nt_m31 versus MA0832.1 (Tcf21); m=2/27; ncol2=14; w=14; offset=2; strand=D; shift=5; score=0.644839; -----ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1641.1_rc_shift6 (MYF5_rc)
; local_words_7nt_m31 versus MA1641.1_rc (MYF5_rc); m=3/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.592831; ------gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift6 (Ptf1a(var.2)_rc)
; local_words_7nt_m31 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=4/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.578257; ------rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1621.1_rc_shift5 (Rbpjl_rc)
; local_words_7nt_m31 versus MA1621.1_rc (Rbpjl_rc); m=5/27; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.573633; -----grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 0 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 0 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 0 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 0 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0

MA1618.1_shift6 (Ptf1a)
; local_words_7nt_m31 versus MA1618.1 (Ptf1a); m=6/27; ncol2=13; w=13; offset=3; strand=D; shift=6; score=0.549738; ------dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; local_words_7nt_m31 versus MA1467.1_rc (ATOH1(var.2)_rc); m=7/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.545171; -------RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0500.2_shift6 (MYOG)
; local_words_7nt_m31 versus MA0500.2 (MYOG); m=8/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.542118; ------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0499.2_rc_shift5 (MYOD1_rc)
; local_words_7nt_m31 versus MA0499.2_rc (MYOD1_rc); m=9/27; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.538908; -----rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0796.1_shift6 (TGIF1)
; local_words_7nt_m31 versus MA0796.1 (TGIF1); m=10/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.536751; ------TGACAGCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; local_words_7nt_m31 versus MA1571.1_rc (TGIF2LX_rc); m=11/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.52727; ------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0

MA0797.1_shift6 (TGIF2)
; local_words_7nt_m31 versus MA0797.1 (TGIF2); m=12/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.522997; ------TGACAGsTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; local_words_7nt_m31 versus MA1572.1_rc (TGIF2LY_rc); m=13/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.51668; ------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0 0

MA0521.1_shift7 (Tcf12)
; local_words_7nt_m31 versus MA0521.1 (Tcf12); m=14/27; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.512776; -------rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0665.1_shift7 (MSC)
; local_words_7nt_m31 versus MA0665.1 (MSC); m=15/27; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.509832; -------AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1655.1_rc_shift8 (ZNF341_rc)
; local_words_7nt_m31 versus MA1655.1_rc (ZNF341_rc); m=16/27; ncol2=12; w=12; offset=5; strand=R; shift=8; score=0.509519; --------stgGCTGTTCyc- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3536.0 4320.0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 1442.0 2599.0 4408.0 0 c 0 0 0 0 0 0 0 0 5691.0 4672.0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 13739.0 8832.0 5798.0 0 g 0 0 0 0 0 0 0 0 5745.0 4431.0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 2043.0 2180.0 4256.0 0 t 0 0 0 0 0 0 0 0 3756.0 5305.0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0 1504.0 5117.0 4266.0 0

MA1620.1_shift6 (Ptf1a(var.3))
; local_words_7nt_m31 versus MA1620.1 (Ptf1a(var.3)); m=17/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.502442; ------rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA0783.1_rc_shift6 (PKNOX2_rc)
; local_words_7nt_m31 versus MA0783.1_rc (PKNOX2_rc); m=18/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.501321; ------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 c 0 0 0 0 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 g 0 0 0 0 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 t 0 0 0 0 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0

MA0667.1_rc_shift7 (MYF6_rc)
; local_words_7nt_m31 versus MA0667.1_rc (MYF6_rc); m=19/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.500243; -------RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; local_words_7nt_m31 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=20/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.496215; -------rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0691.1_rc_shift7 (TFAP4_rc)
; local_words_7nt_m31 versus MA0691.1_rc (TFAP4_rc); m=21/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.482925; -------AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0091.1_rc_shift7 (TAL1::TCF3_rc)
; local_words_7nt_m31 versus MA0091.1_rc (TAL1::TCF3_rc); m=22/27; ncol2=12; w=12; offset=4; strand=R; shift=7; score=0.479048; -------AmCAKMTGkTck-- ; cor=; Ncor= a 0 0 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 0 c 0 0 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 0 g 0 0 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 0 t 0 0 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0 0

MA0816.1_rc_shift7 (Ascl2_rc)
; local_words_7nt_m31 versus MA0816.1_rc (Ascl2_rc); m=23/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.474494; -------rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; local_words_7nt_m31 versus MA1635.1 (BHLHE22(var.2)); m=24/27; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.456039; -------csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1100.2_rc_shift7 (ASCL1_rc)
; local_words_7nt_m31 versus MA1100.2_rc (ASCL1_rc); m=25/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.447711; -------rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0820.1_rc_shift7 (FIGLA_rc)
; local_words_7nt_m31 versus MA0820.1_rc (FIGLA_rc); m=26/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.426392; -------wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA0782.2_shift0 (PKNOX1)
; local_words_7nt_m31 versus MA0782.2 (PKNOX1); m=27/27; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.406826; twTGAgTGACAGctr------ ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m31_shift3 (local_words_7nt_m31local_words_7nt_m31)				; local_words_7nt_m31 (local_words_7nt_m31local_words_7nt_m31); m=0 (reference); ncol1=18; shift=3; ncol=21; ---srgTGACAGCTGTTCcyk ; Alignment reference a 0 0 0 208 250 99 99 50 801 2 955 10 10 8 6 16 38 81 134 175 221 c 0 0 0 272 173 150 40 71 49 955 2 37 911 4 4 101 89 667 572 281 225 g 0 0 0 257 305 646 121 819 64 4 4 901 30 6 946 33 85 127 83 199 271 t 0 0 0 227 236 69 704 24 50 3 3 16 13 946 8 814 752 89 175 309 247
MA1485.1_rc_shift5 (FERD3L_rc)				; local_words_7nt_m31 versus MA1485.1_rc (FERD3L_rc); m=1/27; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.655695; -----GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0
MA0832.1_shift5 (Tcf21)				; local_words_7nt_m31 versus MA0832.1 (Tcf21); m=2/27; ncol2=14; w=14; offset=2; strand=D; shift=5; score=0.644839; -----ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0
MA1641.1_rc_shift6 (MYF5_rc)				; local_words_7nt_m31 versus MA1641.1_rc (MYF5_rc); m=3/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.592831; ------gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0
MA1619.1_rc_shift6 (Ptf1a(var.2)_rc)				; local_words_7nt_m31 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=4/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.578257; ------rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0
MA1621.1_rc_shift5 (Rbpjl_rc)				; local_words_7nt_m31 versus MA1621.1_rc (Rbpjl_rc); m=5/27; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.573633; -----grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 0 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 0 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 0 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 0 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0
MA1618.1_shift6 (Ptf1a)				; local_words_7nt_m31 versus MA1618.1 (Ptf1a); m=6/27; ncol2=13; w=13; offset=3; strand=D; shift=6; score=0.549738; ------dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0
MA1467.1_rc_shift7 (ATOH1(var.2)_rc)				; local_words_7nt_m31 versus MA1467.1_rc (ATOH1(var.2)_rc); m=7/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.545171; -------RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0
MA0500.2_shift6 (MYOG)				; local_words_7nt_m31 versus MA0500.2 (MYOG); m=8/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.542118; ------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0
MA0499.2_rc_shift5 (MYOD1_rc)				; local_words_7nt_m31 versus MA0499.2_rc (MYOD1_rc); m=9/27; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.538908; -----rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0
MA0796.1_shift6 (TGIF1)				; local_words_7nt_m31 versus MA0796.1 (TGIF1); m=10/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.536751; ------TGACAGCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0 0
MA1571.1_rc_shift6 (TGIF2LX_rc)				; local_words_7nt_m31 versus MA1571.1_rc (TGIF2LX_rc); m=11/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.52727; ------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0
MA0797.1_shift6 (TGIF2)				; local_words_7nt_m31 versus MA0797.1 (TGIF2); m=12/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.522997; ------TGACAGsTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0 0
MA1572.1_rc_shift6 (TGIF2LY_rc)				; local_words_7nt_m31 versus MA1572.1_rc (TGIF2LY_rc); m=13/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.51668; ------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0 0
MA0521.1_shift7 (Tcf12)				; local_words_7nt_m31 versus MA0521.1 (Tcf12); m=14/27; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.512776; -------rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0
MA0665.1_shift7 (MSC)				; local_words_7nt_m31 versus MA0665.1 (MSC); m=15/27; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.509832; -------AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0
MA1655.1_rc_shift8 (ZNF341_rc)				; local_words_7nt_m31 versus MA1655.1_rc (ZNF341_rc); m=16/27; ncol2=12; w=12; offset=5; strand=R; shift=8; score=0.509519; --------stgGCTGTTCyc- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3536.0 4320.0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 1442.0 2599.0 4408.0 0 c 0 0 0 0 0 0 0 0 5691.0 4672.0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 13739.0 8832.0 5798.0 0 g 0 0 0 0 0 0 0 0 5745.0 4431.0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 2043.0 2180.0 4256.0 0 t 0 0 0 0 0 0 0 0 3756.0 5305.0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0 1504.0 5117.0 4266.0 0
MA1620.1_shift6 (Ptf1a(var.3))				; local_words_7nt_m31 versus MA1620.1 (Ptf1a(var.3)); m=17/27; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.502442; ------rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0
MA0783.1_rc_shift6 (PKNOX2_rc)				; local_words_7nt_m31 versus MA0783.1_rc (PKNOX2_rc); m=18/27; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.501321; ------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 c 0 0 0 0 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 g 0 0 0 0 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 t 0 0 0 0 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0
MA0667.1_rc_shift7 (MYF6_rc)				; local_words_7nt_m31 versus MA0667.1_rc (MYF6_rc); m=19/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.500243; -------RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0
MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)				; local_words_7nt_m31 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=20/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.496215; -------rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0
MA0691.1_rc_shift7 (TFAP4_rc)				; local_words_7nt_m31 versus MA0691.1_rc (TFAP4_rc); m=21/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.482925; -------AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0
MA0091.1_rc_shift7 (TAL1::TCF3_rc)				; local_words_7nt_m31 versus MA0091.1_rc (TAL1::TCF3_rc); m=22/27; ncol2=12; w=12; offset=4; strand=R; shift=7; score=0.479048; -------AmCAKMTGkTck-- ; cor=; Ncor= a 0 0 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 0 c 0 0 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 0 g 0 0 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 0 t 0 0 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0 0
MA0816.1_rc_shift7 (Ascl2_rc)				; local_words_7nt_m31 versus MA0816.1_rc (Ascl2_rc); m=23/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.474494; -------rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0
MA1635.1_shift7 (BHLHE22(var.2))				; local_words_7nt_m31 versus MA1635.1 (BHLHE22(var.2)); m=24/27; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.456039; -------csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA1100.2_rc_shift7 (ASCL1_rc)				; local_words_7nt_m31 versus MA1100.2_rc (ASCL1_rc); m=25/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.447711; -------rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0
MA0820.1_rc_shift7 (FIGLA_rc)				; local_words_7nt_m31 versus MA0820.1_rc (FIGLA_rc); m=26/27; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.426392; -------wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0
MA0782.2_shift0 (PKNOX1)				; local_words_7nt_m31 versus MA0782.2 (PKNOX1); m=27/27; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.406826; twTGAgTGACAGctr------ ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0 0 0