One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m40/peak-motifs_local_words_7nt_m40.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m40/peak-motifs_local_words_7nt_m40_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m40_shift0 ; 13 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
local_words_7nt_m40_shift0 (local_words_7nt_m40local_words_7nt_m40)    
; local_words_7nt_m40 (local_words_7nt_m40local_words_7nt_m40); m=0 (reference); ncol1=19; shift=0; ncol=19; skgcCTGCAGCTGTCAcyg
; Alignment reference
a	192	245	147	125	73	93	40	13	1042	6	8	8	3	14	11	744	76	222	208
c	345	261	231	575	867	45	74	1054	13	41	1057	6	12	63	979	161	727	359	269
g	322	284	523	216	72	33	939	9	7	1012	4	7	1069	19	51	73	170	202	378
t	228	297	186	171	75	916	34	11	25	28	18	1066	3	991	46	109	114	304	232
MA0499.2_shift4 (MYOD1)
; local_words_7nt_m40 versus MA0499.2 (MYOD1); m=1/12; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.55966; ----cwgCACCTGTymy--
; cor=; Ncor=
a	0	0	0	0	7175.0	9462.0	4549.0	349.0	32281.0	463.0	534.0	241.0	208.0	402.0	1808.0	9462.0	5687.0	0	0
c	0	0	0	0	11279.0	7103.0	5622.0	33328.0	583.0	25275.0	32504.0	563.0	386.0	2555.0	19052.0	10485.0	11760.0	0	0
g	0	0	0	0	8118.0	8444.0	21884.0	354.0	849.0	7336.0	932.0	366.0	33468.0	1699.0	4440.0	6202.0	7495.0	0	0
t	0	0	0	0	7728.0	9291.0	2245.0	269.0	587.0	1226.0	330.0	33130.0	238.0	29644.0	9000.0	8151.0	9358.0	0	0
MA1485.1_shift3 (FERD3L)
; local_words_7nt_m40 versus MA1485.1 (FERD3L); m=2/12; ncol2=14; w=14; offset=3; strand=D; shift=3; score=0.54003; ---GyrmCAGCTGTyAC--
; cor=; Ncor=
a	0	0	0	2158.0	450.0	14384.0	15390.0	36.0	29605.0	0.0	3649.0	81.0	0.0	1268.0	103.0	29605.0	0.0	0	0
c	0	0	0	68.0	20049.0	2443.0	9363.0	29605.0	126.0	841.0	29605.0	129.0	0.0	3878.0	8664.0	809.0	29605.0	0	0
g	0	0	0	29605.0	348.0	12703.0	3142.0	0.0	118.0	29605.0	471.0	210.0	29605.0	3395.0	5920.0	9815.0	0.0	0	0
t	0	0	0	225.0	9557.0	74.0	1710.0	0.0	144.0	4691.0	0.0	29605.0	0.0	21065.0	14919.0	958.0	48.0	0	0
MA0521.1_rc_shift4 (Tcf12_rc)
; local_words_7nt_m40 versus MA0521.1_rc (Tcf12_rc); m=3/12; ncol2=11; w=11; offset=4; strand=R; shift=4; score=0.510511; ----cwsCAGCTGYy----
; cor=; Ncor=
a	0	0	0	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0	0	0
c	0	0	0	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0	0	0
g	0	0	0	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0	0	0
t	0	0	0	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0	0	0
MA0500.2_shift4 (MYOG)
; local_words_7nt_m40 versus MA0500.2 (MYOG); m=4/12; ncol2=12; w=12; offset=4; strand=D; shift=4; score=0.500593; ----sarCAGCTGyts---
; cor=; Ncor=
a	0	0	0	0	5310.0	8428.0	7159.0	86.0	21782.0	95.0	167.0	163.0	182.0	1667.0	4667.0	5018.0	0	0	0
c	0	0	0	0	6381.0	3754.0	2730.0	21988.0	176.0	130.0	21964.0	238.0	102.0	10792.0	5497.0	5660.0	0	0	0
g	0	0	0	0	5596.0	5483.0	10790.0	101.0	236.0	21963.0	131.0	179.0	21985.0	2706.0	3718.0	6369.0	0	0	0
t	0	0	0	0	5070.0	4692.0	1678.0	182.0	163.0	169.0	95.0	21777.0	88.0	7192.0	8475.0	5310.0	0	0	0
MA0745.2_shift4 (SNAI2)
; local_words_7nt_m40 versus MA0745.2 (SNAI2); m=5/12; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.497755; ----aygCACCTGTmry--
; cor=; Ncor=
a	0	0	0	0	14658.0	7668.0	10322.0	408.0	44963.0	112.0	246.0	78.0	179.0	814.0	12017.0	13586.0	6215.0	0	0
c	0	0	0	0	10031.0	12314.0	6393.0	44463.0	202.0	45144.0	44739.0	313.0	254.0	6467.0	18771.0	11016.0	13476.0	0	0
g	0	0	0	0	11169.0	9490.0	26742.0	323.0	424.0	326.0	487.0	196.0	45257.0	1263.0	6281.0	12297.0	8219.0	0	0
t	0	0	0	0	9958.0	16344.0	2359.0	622.0	227.0	234.0	344.0	45229.0	126.0	37272.0	8747.0	8917.0	17906.0	0	0
MA1641.1_rc_shift4 (MYF5_rc)
; local_words_7nt_m40 versus MA1641.1_rc (MYF5_rc); m=6/12; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.484097; ----gvaCAGCTGtbc---
; cor=; Ncor=
a	0	0	0	0	2697.0	3507.0	7489.0	95.0	10966.0	100.0	222.0	129.0	43.0	578.0	1572.0	2554.0	0	0	0
c	0	0	0	0	2701.0	2985.0	1368.0	10912.0	47.0	230.0	10658.0	69.0	161.0	1774.0	3145.0	3258.0	0	0	0
g	0	0	0	0	3258.0	3146.0	1775.0	161.0	68.0	10657.0	230.0	47.0	10911.0	1368.0	2986.0	2700.0	0	0	0
t	0	0	0	0	2554.0	1572.0	578.0	42.0	129.0	223.0	100.0	10965.0	95.0	7490.0	3507.0	2698.0	0	0	0
MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; local_words_7nt_m40 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/12; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.48394; ----rmaCAGCTGtky---
; cor=; Ncor=
a	0	0	0	0	1871.0	1974.0	4341.0	49.0	7121.0	33.0	223.0	28.0	27.0	529.0	1216.0	1607.0	0	0	0
c	0	0	0	0	1803.0	2426.0	1065.0	7150.0	40.0	299.0	6689.0	65.0	28.0	1308.0	1629.0	1974.0	0	0	0
g	0	0	0	0	1977.0	1632.0	1312.0	27.0	66.0	6697.0	307.0	41.0	7149.0	1070.0	2430.0	1803.0	0	0	0
t	0	0	0	0	1602.0	1221.0	535.0	27.0	26.0	224.0	34.0	7119.0	49.0	4346.0	1978.0	1869.0	0	0	0
MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)
; local_words_7nt_m40 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=8/12; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.432459; -----csCAGCTGsg----
; cor=; Ncor=
a	0	0	0	0	0	3886.0	4449.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4402.0	0	0	0	0
c	0	0	0	0	0	5625.0	5112.0	18327.0	37.0	53.0	18288.0	52.0	11.0	7267.0	4447.0	0	0	0	0
g	0	0	0	0	0	4447.0	7269.0	15.0	52.0	18288.0	53.0	37.0	18331.0	5110.0	5621.0	0	0	0	0
t	0	0	0	0	0	4398.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4453.0	3886.0	0	0	0	0
MA1100.2_rc_shift5 (ASCL1_rc)
; local_words_7nt_m40 versus MA1100.2_rc (ASCL1_rc); m=9/12; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.429677; -----rgCAGCTGyy----
; cor=; Ncor=
a	0	0	0	0	0	1194.0	1349.0	29.0	4413.0	20.0	625.0	218.0	14.0	354.0	726.0	0	0	0	0
c	0	0	0	0	0	889.0	814.0	4413.0	121.0	1320.0	4413.0	60.0	0.0	3079.0	1495.0	0	0	0	0
g	0	0	0	0	0	1487.0	3065.0	0.0	24.0	4413.0	1288.0	157.0	4413.0	521.0	926.0	0	0	0	0
t	0	0	0	0	0	843.0	177.0	52.0	118.0	729.0	107.0	4413.0	0.0	1334.0	1267.0	0	0	0	0
MA1467.1_shift5 (ATOH1(var.2))
; local_words_7nt_m40 versus MA1467.1 (ATOH1(var.2)); m=10/12; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.418445; -----AACAGCTGTY----
; cor=; Ncor=
a	0	0	0	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0	0	0	0
c	0	0	0	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0	0	0	0
g	0	0	0	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0	0	0	0
t	0	0	0	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0	0	0	0
MA1472.1_shift5 (BHLHA15(var.2))
; local_words_7nt_m40 versus MA1472.1 (BHLHA15(var.2)); m=11/12; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.418009; -----avCAGCTGyy----
; cor=; Ncor=
a	0	0	0	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0	0	0	0
c	0	0	0	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0	0	0	0
g	0	0	0	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0	0	0	0
t	0	0	0	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0	0	0	0
MA0816.1_rc_shift5 (Ascl2_rc)
; local_words_7nt_m40 versus MA0816.1_rc (Ascl2_rc); m=12/12; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.415445; -----rrCAGCTGyt----
; cor=; Ncor=
a	0	0	0	0	0	199.0	94.0	2.0	300.0	1.0	18.0	15.0	1.0	1.0	16.0	0	0	0	0
c	0	0	0	0	0	28.0	15.0	300.0	0.0	2.0	300.0	0.0	0.0	172.0	63.0	0	0	0	0
g	0	0	0	0	0	101.0	206.0	1.0	0.0	300.0	23.0	0.0	300.0	41.0	36.0	0	0	0	0
t	0	0	0	0	0	34.0	6.0	0.0	4.0	3.0	7.0	300.0	3.0	128.0	237.0	0	0	0	0