Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44.tf
		file1	1	15	1955
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_7nt_m44 MA0499.2 local_words_7nt_m44local_words_7nt_m44 MYOD1 0.914 0.792 15 13 13 15 0.8667 0.8667 1.0000 D 2
local_words_7nt_m44 MA1621.1 local_words_7nt_m44local_words_7nt_m44 Rbpjl 0.831 0.775 15 14 14 15 0.9333 0.9333 1.0000 D 1
local_words_7nt_m44 MA0745.2 local_words_7nt_m44local_words_7nt_m44 SNAI2 0.874 0.758 15 13 13 15 0.8667 0.8667 1.0000 D 2
local_words_7nt_m44 MA0832.1 local_words_7nt_m44local_words_7nt_m44 Tcf21 0.783 0.731 15 14 14 15 0.9333 0.9333 1.0000 R 1
local_words_7nt_m44 MA0830.2 local_words_7nt_m44local_words_7nt_m44 TCF4 0.811 0.703 15 13 13 15 0.8667 0.8667 1.0000 D 2
local_words_7nt_m44 MA1631.1 local_words_7nt_m44local_words_7nt_m44 ASCL1(var.2) 0.786 0.681 15 13 13 15 0.8667 0.8667 1.0000 D 2
local_words_7nt_m44 MA1620.1 local_words_7nt_m44local_words_7nt_m44 Ptf1a(var.3) 0.824 0.659 15 12 12 15 0.8000 0.8000 1.0000 D 2
local_words_7nt_m44 MA1618.1 local_words_7nt_m44local_words_7nt_m44 Ptf1a 0.738 0.640 15 13 13 15 0.8667 0.8667 1.0000 R 1
local_words_7nt_m44 MA0521.1 local_words_7nt_m44local_words_7nt_m44 Tcf12 0.844 0.619 15 11 11 15 0.7333 0.7333 1.0000 R 2
local_words_7nt_m44 MA0500.2 local_words_7nt_m44local_words_7nt_m44 MYOG 0.762 0.610 15 12 12 15 0.8000 0.8000 1.0000 D 2
local_words_7nt_m44 MA1105.2 local_words_7nt_m44local_words_7nt_m44 GRHL2 0.752 0.601 15 12 12 15 0.8000 0.8000 1.0000 R 3
local_words_7nt_m44 MA0744.2 local_words_7nt_m44local_words_7nt_m44 SCRT2 0.822 0.594 15 16 13 18 0.7222 0.8667 0.8125 R 2
local_words_7nt_m44 MA1559.1 local_words_7nt_m44local_words_7nt_m44 SNAI3 0.889 0.593 15 10 10 15 0.6667 0.6667 1.0000 R 3
local_words_7nt_m44 MA0743.2 local_words_7nt_m44local_words_7nt_m44 SCRT1 0.816 0.589 15 16 13 18 0.7222 0.8667 0.8125 R 2
local_words_7nt_m44 MA1641.1 local_words_7nt_m44local_words_7nt_m44 MYF5 0.734 0.587 15 12 12 15 0.8000 0.8000 1.0000 R 2
local_words_7nt_m44 MA1619.1 local_words_7nt_m44local_words_7nt_m44 Ptf1a(var.2) 0.733 0.586 15 12 12 15 0.8000 0.8000 1.0000 D 2
local_words_7nt_m44 MA0091.1 local_words_7nt_m44local_words_7nt_m44 TAL1::TCF3 0.727 0.582 15 12 12 15 0.8000 0.8000 1.0000 D 1
local_words_7nt_m44 MA0820.1 local_words_7nt_m44local_words_7nt_m44 FIGLA 0.869 0.579 15 10 10 15 0.6667 0.6667 1.0000 D 3
local_words_7nt_m44 MA0103.3 local_words_7nt_m44local_words_7nt_m44 ZEB1 0.775 0.569 15 11 11 15 0.7333 0.7333 1.0000 D 3
local_words_7nt_m44 MA1558.1 local_words_7nt_m44local_words_7nt_m44 SNAI1 0.831 0.554 15 10 10 15 0.6667 0.6667 1.0000 R 3
local_words_7nt_m44 MA0816.1 local_words_7nt_m44local_words_7nt_m44 Ascl2 0.820 0.547 15 10 10 15 0.6667 0.6667 1.0000 R 3
local_words_7nt_m44 MA0665.1 local_words_7nt_m44local_words_7nt_m44 MSC 0.814 0.543 15 10 10 15 0.6667 0.6667 1.0000 D 3
local_words_7nt_m44 MA1648.1 local_words_7nt_m44local_words_7nt_m44 TCF12(var.2) 0.740 0.542 15 11 11 15 0.7333 0.7333 1.0000 D 3
local_words_7nt_m44 MA0522.3 local_words_7nt_m44local_words_7nt_m44 TCF3 0.729 0.534 15 11 11 15 0.7333 0.7333 1.0000 D 3
local_words_7nt_m44 MA0667.1 local_words_7nt_m44local_words_7nt_m44 MYF6 0.800 0.534 15 10 10 15 0.6667 0.6667 1.0000 D 3
local_words_7nt_m44 MA1472.1 local_words_7nt_m44local_words_7nt_m44 BHLHA15(var.2) 0.786 0.524 15 10 10 15 0.6667 0.6667 1.0000 D 3
local_words_7nt_m44 MA1100.2 local_words_7nt_m44local_words_7nt_m44 ASCL1 0.784 0.523 15 10 10 15 0.6667 0.6667 1.0000 R 3
local_words_7nt_m44 MA0691.1 local_words_7nt_m44local_words_7nt_m44 TFAP4 0.778 0.518 15 10 10 15 0.6667 0.6667 1.0000 R 3
local_words_7nt_m44 MA1467.1 local_words_7nt_m44local_words_7nt_m44 ATOH1(var.2) 0.772 0.514 15 10 10 15 0.6667 0.6667 1.0000 R 3
local_words_7nt_m44 MA0819.1 local_words_7nt_m44local_words_7nt_m44 CLOCK 0.728 0.485 15 10 10 15 0.6667 0.6667 1.0000 R 3
local_words_7nt_m44 MA1493.1 local_words_7nt_m44local_words_7nt_m44 HES6 0.727 0.485 15 10 10 15 0.6667 0.6667 1.0000 D 3
local_words_7nt_m44 MA0048.2 local_words_7nt_m44local_words_7nt_m44 NHLH1 0.724 0.482 15 10 10 15 0.6667 0.6667 1.0000 D 3
local_words_7nt_m44 MA1570.1 local_words_7nt_m44local_words_7nt_m44 TFAP4(var.2) 0.714 0.476 15 10 10 15 0.6667 0.6667 1.0000 R 3
local_words_7nt_m44 MA1635.1 local_words_7nt_m44local_words_7nt_m44 BHLHE22(var.2) 0.713 0.475 15 10 10 15 0.6667 0.6667 1.0000 R 3
local_words_7nt_m44 MA0626.1 local_words_7nt_m44local_words_7nt_m44 Npas2 0.700 0.467 15 10 10 15 0.6667 0.6667 1.0000 D 3 
 Host name	pedagogix
 Job started	2020-04-14.161622
 Job done	2020-04-14.161710
 Seconds	6.55
	user	6.55
	system	0.8
	cuser	37.83
;	csystem	2.24