One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m44/peak-motifs_local_words_7nt_m44_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m44_shift0 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m44_shift0 (local_words_7nt_m44local_words_7nt_m44)
; local_words_7nt_m44 (local_words_7nt_m44local_words_7nt_m44); m=0 (reference); ncol1=15; shift=0; ncol=18; sscAGCACCTGTTsy--- ; Alignment reference a 395 425 221 1340 127 14 1912 35 16 11 4 7 20 372 304 0 0 0 c 675 608 1257 154 154 1920 14 1524 1919 11 8 136 178 633 743 0 0 0 g 543 491 242 197 1629 11 14 348 15 4 1939 24 117 571 376 0 0 0 t 342 431 235 264 45 10 15 48 5 1929 4 1788 1640 379 532 0 0 0

MA0499.2_shift2 (MYOD1)
; local_words_7nt_m44 versus MA0499.2 (MYOD1); m=1/35; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.791992; --cwgCACCTGTymy--- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0

MA1621.1_shift1 (Rbpjl)
; local_words_7nt_m44 versus MA1621.1 (Rbpjl); m=2/35; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.775267; -svmaCACCTGtsyc--- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0

MA0745.2_shift2 (SNAI2)
; local_words_7nt_m44 versus MA0745.2 (SNAI2); m=3/35; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.757573; --aygCACCTGTmry--- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; local_words_7nt_m44 versus MA0832.1_rc (Tcf21_rc); m=4/35; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.730834; -ryAACAGCTGTTry--- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0

MA0830.2_shift2 (TCF4)
; local_words_7nt_m44 versus MA0830.2 (TCF4); m=5/35; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.703253; --cggCACCTGccss--- ; cor=; Ncor= a 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 c 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 g 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 t 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; local_words_7nt_m44 versus MA1631.1 (ASCL1(var.2)); m=6/35; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.681034; --cdgCACCTGCysc--- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; local_words_7nt_m44 versus MA1620.1 (Ptf1a(var.3)); m=7/35; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.658867; --rmaCACCTGtky---- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; local_words_7nt_m44 versus MA1618.1_rc (Ptf1a_rc); m=8/35; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.639523; -dmaaCATCTGtkh---- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; local_words_7nt_m44 versus MA0521.1_rc (Tcf12_rc); m=9/35; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.619235; --cwsCAGCTGYy----- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0

MA0500.2_shift2 (MYOG)
; local_words_7nt_m44 versus MA0500.2 (MYOG); m=10/35; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.60972; --sarCAGCTGyts---- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0

MA1105.2_rc_shift3 (GRHL2_rc)
; local_words_7nt_m44 versus MA1105.2_rc (GRHL2_rc); m=11/35; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.60143; ---maAACCTGTTyt--- ; cor=; Ncor= a 0 0 0 13946.0 17515.0 36906.0 36921.0 625.0 1247.0 5826.0 320.0 1260.0 1618.0 6264.0 8493.0 0 0 0 c 0 0 0 10536.0 7961.0 1220.0 748.0 39624.0 37226.0 485.0 609.0 2841.0 2646.0 10776.0 9161.0 0 0 0 g 0 0 0 8528.0 9341.0 2000.0 2331.0 987.0 581.0 1543.0 40446.0 712.0 1147.0 6996.0 9741.0 0 0 0 t 0 0 0 8868.0 7061.0 1752.0 1878.0 642.0 2824.0 34024.0 503.0 37065.0 36467.0 17842.0 14483.0 0 0 0

MA0744.2_rc_shift2 (SCRT2_rc)
; local_words_7nt_m44 versus MA0744.2_rc (SCRT2_rc); m=12/35; ncol2=16; w=13; offset=2; strand=R; shift=2; score=0.59398; --waccACCTGTTGmwyy ; cor=; Ncor= a 0 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 15730.0 c 0 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 17680.0 g 0 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 13345.0 t 0 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0 18855.0

MA1559.1_rc_shift3 (SNAI3_rc)
; local_words_7nt_m44 versus MA1559.1_rc (SNAI3_rc); m=13/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.592981; ---trCACCTGyt----- ; cor=; Ncor= a 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 c 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 g 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 t 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0

MA0743.2_rc_shift2 (SCRT1_rc)
; local_words_7nt_m44 versus MA0743.2_rc (SCRT1_rc); m=14/35; ncol2=16; w=13; offset=2; strand=R; shift=2; score=0.589217; --wacCACCTGTTGmwtw ; cor=; Ncor= a 0 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 12449.0 15464.0 c 0 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 14514.0 14307.0 g 0 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 10314.0 14118.0 t 0 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0 22932.0 16320.0

MA1641.1_rc_shift2 (MYF5_rc)
; local_words_7nt_m44 versus MA1641.1_rc (MYF5_rc); m=15/35; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.587158; --gvaCAGCTGtbc---- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; local_words_7nt_m44 versus MA1619.1 (Ptf1a(var.2)); m=16/35; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.586103; --rmaCAGCTGtky---- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; local_words_7nt_m44 versus MA0091.1 (TAL1::TCF3); m=17/35; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.581711; -mgAmCAKMTGkT----- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0

MA0820.1_shift3 (FIGLA)
; local_words_7nt_m44 versus MA0820.1 (FIGLA); m=18/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.579252; ---wmCACCTGkw----- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0

MA0103.3_shift3 (ZEB1)
; local_words_7nt_m44 versus MA0103.3 (ZEB1); m=19/35; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.56861; ---ssCACCTGsss---- ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0

MA1558.1_rc_shift3 (SNAI1_rc)
; local_words_7nt_m44 versus MA1558.1_rc (SNAI1_rc); m=20/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.554014; ---yrCACCTGyh----- ; cor=; Ncor= a 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 c 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 g 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 t 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; local_words_7nt_m44 versus MA0816.1_rc (Ascl2_rc); m=21/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.546863; ---rrCAGCTGyt----- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0 0

MA0665.1_shift3 (MSC)
; local_words_7nt_m44 versus MA0665.1 (MSC); m=22/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.542687; ---AACAGCTGTT----- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; local_words_7nt_m44 versus MA1648.1 (TCF12(var.2)); m=23/35; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.542314; ---ssCACCTGCys---- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0

MA0522.3_shift3 (TCF3)
; local_words_7nt_m44 versus MA0522.3 (TCF3); m=24/35; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.534408; ---svCACCTGCss---- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0

MA0667.1_shift3 (MYF6)
; local_words_7nt_m44 versus MA0667.1 (MYF6); m=25/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.533657; ---AACArCTGTY----- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0 0

MA1472.1_shift3 (BHLHA15(var.2))
; local_words_7nt_m44 versus MA1472.1 (BHLHA15(var.2)); m=26/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.523886; ---avCAGCTGyy----- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; local_words_7nt_m44 versus MA1100.2_rc (ASCL1_rc); m=27/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.522591; ---rgCAGCTGyy----- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0

MA0691.1_rc_shift3 (TFAP4_rc)
; local_words_7nt_m44 versus MA0691.1_rc (TFAP4_rc); m=28/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.518367; ---AwCAGCTGwT----- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; local_words_7nt_m44 versus MA1467.1_rc (ATOH1(var.2)_rc); m=29/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.514387; ---RACAGCTGTT----- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0

MA0819.1_rc_shift3 (CLOCK_rc)
; local_words_7nt_m44 versus MA0819.1_rc (CLOCK_rc); m=30/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.485081; ---raCACGTGTt----- ; cor=; Ncor= a 0 0 0 174.0 429.0 9.0 429.0 0.0 28.0 0.0 2.0 13.0 75.0 0 0 0 0 0 c 0 0 0 39.0 110.0 429.0 5.0 429.0 0.0 15.0 2.0 89.0 93.0 0 0 0 0 0 g 0 0 0 128.0 152.0 3.0 5.0 0.0 429.0 5.0 429.0 85.0 35.0 0 0 0 0 0 t 0 0 0 89.0 1.0 0.0 3.0 40.0 16.0 429.0 11.0 429.0 226.0 0 0 0 0 0

MA1493.1_shift3 (HES6)
; local_words_7nt_m44 versus MA1493.1 (HES6); m=31/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.484539; ---GGCACGTGTy----- ; cor=; Ncor= a 0 0 0 12.0 16.0 17.0 439.0 2.0 10.0 0.0 0.0 33.0 79.0 0 0 0 0 0 c 0 0 0 39.0 35.0 439.0 0.0 439.0 12.0 7.0 0.0 21.0 152.0 0 0 0 0 0 g 0 0 0 439.0 439.0 19.0 9.0 9.0 439.0 29.0 439.0 0.0 0.0 0 0 0 0 0 t 0 0 0 43.0 13.0 15.0 11.0 16.0 0.0 439.0 0.0 439.0 209.0 0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; local_words_7nt_m44 versus MA0048.2 (NHLH1); m=32/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.482387; ---cGCAGCTGCk----- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0

MA1570.1_rc_shift3 (TFAP4(var.2)_rc)
; local_words_7nt_m44 versus MA1570.1_rc (TFAP4(var.2)_rc); m=33/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.476306; ---amCAyrTGdt----- ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 0 0 0 0 0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 0 0 0 0 0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 0 0 0 0 0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0 0 0 0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; local_words_7nt_m44 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=34/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.47512; ---csCAGCTGsg----- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0

MA0626.1_shift3 (Npas2)
; local_words_7nt_m44 versus MA0626.1 (Npas2); m=35/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.466855; ---dsCACGTGtm----- ; cor=; Ncor= a 0 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 0 0 0 0 c 0 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 0 0 0 0 g 0 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 0 0 0 0 t 0 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m44_shift0 (local_words_7nt_m44local_words_7nt_m44)				; local_words_7nt_m44 (local_words_7nt_m44local_words_7nt_m44); m=0 (reference); ncol1=15; shift=0; ncol=18; sscAGCACCTGTTsy--- ; Alignment reference a 395 425 221 1340 127 14 1912 35 16 11 4 7 20 372 304 0 0 0 c 675 608 1257 154 154 1920 14 1524 1919 11 8 136 178 633 743 0 0 0 g 543 491 242 197 1629 11 14 348 15 4 1939 24 117 571 376 0 0 0 t 342 431 235 264 45 10 15 48 5 1929 4 1788 1640 379 532 0 0 0
MA0499.2_shift2 (MYOD1)				; local_words_7nt_m44 versus MA0499.2 (MYOD1); m=1/35; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.791992; --cwgCACCTGTymy--- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0
MA1621.1_shift1 (Rbpjl)				; local_words_7nt_m44 versus MA1621.1 (Rbpjl); m=2/35; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.775267; -svmaCACCTGtsyc--- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0
MA0745.2_shift2 (SNAI2)				; local_words_7nt_m44 versus MA0745.2 (SNAI2); m=3/35; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.757573; --aygCACCTGTmry--- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0
MA0832.1_rc_shift1 (Tcf21_rc)				; local_words_7nt_m44 versus MA0832.1_rc (Tcf21_rc); m=4/35; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.730834; -ryAACAGCTGTTry--- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0 0
MA0830.2_shift2 (TCF4)				; local_words_7nt_m44 versus MA0830.2 (TCF4); m=5/35; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.703253; --cggCACCTGccss--- ; cor=; Ncor= a 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 c 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 g 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 t 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0
MA1631.1_shift2 (ASCL1(var.2))				; local_words_7nt_m44 versus MA1631.1 (ASCL1(var.2)); m=6/35; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.681034; --cdgCACCTGCysc--- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0
MA1620.1_shift2 (Ptf1a(var.3))				; local_words_7nt_m44 versus MA1620.1 (Ptf1a(var.3)); m=7/35; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.658867; --rmaCACCTGtky---- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0
MA1618.1_rc_shift1 (Ptf1a_rc)				; local_words_7nt_m44 versus MA1618.1_rc (Ptf1a_rc); m=8/35; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.639523; -dmaaCATCTGtkh---- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0
MA0521.1_rc_shift2 (Tcf12_rc)				; local_words_7nt_m44 versus MA0521.1_rc (Tcf12_rc); m=9/35; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.619235; --cwsCAGCTGYy----- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0
MA0500.2_shift2 (MYOG)				; local_words_7nt_m44 versus MA0500.2 (MYOG); m=10/35; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.60972; --sarCAGCTGyts---- ; cor=; Ncor= a 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 0 c 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 0 g 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 0 t 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0 0
MA1105.2_rc_shift3 (GRHL2_rc)				; local_words_7nt_m44 versus MA1105.2_rc (GRHL2_rc); m=11/35; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.60143; ---maAACCTGTTyt--- ; cor=; Ncor= a 0 0 0 13946.0 17515.0 36906.0 36921.0 625.0 1247.0 5826.0 320.0 1260.0 1618.0 6264.0 8493.0 0 0 0 c 0 0 0 10536.0 7961.0 1220.0 748.0 39624.0 37226.0 485.0 609.0 2841.0 2646.0 10776.0 9161.0 0 0 0 g 0 0 0 8528.0 9341.0 2000.0 2331.0 987.0 581.0 1543.0 40446.0 712.0 1147.0 6996.0 9741.0 0 0 0 t 0 0 0 8868.0 7061.0 1752.0 1878.0 642.0 2824.0 34024.0 503.0 37065.0 36467.0 17842.0 14483.0 0 0 0
MA0744.2_rc_shift2 (SCRT2_rc)				; local_words_7nt_m44 versus MA0744.2_rc (SCRT2_rc); m=12/35; ncol2=16; w=13; offset=2; strand=R; shift=2; score=0.59398; --waccACCTGTTGmwyy ; cor=; Ncor= a 0 0 21453.0 18751.0 15588.0 11335.0 58889.0 2140.0 1471.0 1184.0 204.0 953.0 4384.0 3732.0 17252.0 16873.0 12071.0 15730.0 c 0 0 12430.0 14716.0 25288.0 38133.0 1168.0 60636.0 56105.0 252.0 319.0 1878.0 2265.0 1339.0 35769.0 12473.0 17497.0 17680.0 g 0 0 13846.0 16085.0 11351.0 5661.0 3475.0 972.0 728.0 294.0 64856.0 413.0 5536.0 59161.0 7236.0 6319.0 12732.0 13345.0 t 0 0 17881.0 16058.0 13383.0 10481.0 2078.0 1862.0 7306.0 63880.0 231.0 62366.0 53425.0 1378.0 5353.0 29945.0 23310.0 18855.0
MA1559.1_rc_shift3 (SNAI3_rc)				; local_words_7nt_m44 versus MA1559.1_rc (SNAI3_rc); m=13/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.592981; ---trCACCTGyt----- ; cor=; Ncor= a 0 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 c 0 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 g 0 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 t 0 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0
MA0743.2_rc_shift2 (SCRT1_rc)				; local_words_7nt_m44 versus MA0743.2_rc (SCRT1_rc); m=14/35; ncol2=16; w=13; offset=2; strand=R; shift=2; score=0.589217; --wacCACCTGTTGmwtw ; cor=; Ncor= a 0 0 19839.0 18454.0 13726.0 7910.0 57969.0 1579.0 1305.0 1058.0 215.0 1002.0 4017.0 2621.0 31975.0 24326.0 12449.0 15464.0 c 0 0 11049.0 13470.0 26973.0 41190.0 259.0 56500.0 51330.0 159.0 224.0 1566.0 1835.0 1297.0 16396.0 10154.0 14514.0 14307.0 g 0 0 12837.0 14903.0 8788.0 3296.0 1098.0 466.0 557.0 234.0 59557.0 370.0 8751.0 54835.0 7425.0 8693.0 10314.0 14118.0 t 0 0 16484.0 13382.0 10722.0 7813.0 883.0 1664.0 7017.0 58758.0 213.0 57271.0 45606.0 1456.0 4413.0 17036.0 22932.0 16320.0
MA1641.1_rc_shift2 (MYF5_rc)				; local_words_7nt_m44 versus MA1641.1_rc (MYF5_rc); m=15/35; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.587158; --gvaCAGCTGtbc---- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0
MA1619.1_shift2 (Ptf1a(var.2))				; local_words_7nt_m44 versus MA1619.1 (Ptf1a(var.2)); m=16/35; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.586103; --rmaCAGCTGtky---- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0
MA0091.1_shift1 (TAL1::TCF3)				; local_words_7nt_m44 versus MA0091.1 (TAL1::TCF3); m=17/35; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.581711; -mgAmCAKMTGkT----- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0
MA0820.1_shift3 (FIGLA)				; local_words_7nt_m44 versus MA0820.1 (FIGLA); m=18/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.579252; ---wmCACCTGkw----- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0
MA0103.3_shift3 (ZEB1)				; local_words_7nt_m44 versus MA0103.3 (ZEB1); m=19/35; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.56861; ---ssCACCTGsss---- ; cor=; Ncor= a 0 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 c 0 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 g 0 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 t 0 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0
MA1558.1_rc_shift3 (SNAI1_rc)				; local_words_7nt_m44 versus MA1558.1_rc (SNAI1_rc); m=20/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.554014; ---yrCACCTGyh----- ; cor=; Ncor= a 0 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 c 0 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 g 0 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 t 0 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0
MA0816.1_rc_shift3 (Ascl2_rc)				; local_words_7nt_m44 versus MA0816.1_rc (Ascl2_rc); m=21/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.546863; ---rrCAGCTGyt----- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0 0
MA0665.1_shift3 (MSC)				; local_words_7nt_m44 versus MA0665.1 (MSC); m=22/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.542687; ---AACAGCTGTT----- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0
MA1648.1_shift3 (TCF12(var.2))				; local_words_7nt_m44 versus MA1648.1 (TCF12(var.2)); m=23/35; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.542314; ---ssCACCTGCys---- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0
MA0522.3_shift3 (TCF3)				; local_words_7nt_m44 versus MA0522.3 (TCF3); m=24/35; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.534408; ---svCACCTGCss---- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0 0
MA0667.1_shift3 (MYF6)				; local_words_7nt_m44 versus MA0667.1 (MYF6); m=25/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.533657; ---AACArCTGTY----- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0 0
MA1472.1_shift3 (BHLHA15(var.2))				; local_words_7nt_m44 versus MA1472.1 (BHLHA15(var.2)); m=26/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.523886; ---avCAGCTGyy----- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; local_words_7nt_m44 versus MA1100.2_rc (ASCL1_rc); m=27/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.522591; ---rgCAGCTGyy----- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0
MA0691.1_rc_shift3 (TFAP4_rc)				; local_words_7nt_m44 versus MA0691.1_rc (TFAP4_rc); m=28/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.518367; ---AwCAGCTGwT----- ; cor=; Ncor= a 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 0 c 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 0 g 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 0 t 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; local_words_7nt_m44 versus MA1467.1_rc (ATOH1(var.2)_rc); m=29/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.514387; ---RACAGCTGTT----- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0
MA0819.1_rc_shift3 (CLOCK_rc)				; local_words_7nt_m44 versus MA0819.1_rc (CLOCK_rc); m=30/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.485081; ---raCACGTGTt----- ; cor=; Ncor= a 0 0 0 174.0 429.0 9.0 429.0 0.0 28.0 0.0 2.0 13.0 75.0 0 0 0 0 0 c 0 0 0 39.0 110.0 429.0 5.0 429.0 0.0 15.0 2.0 89.0 93.0 0 0 0 0 0 g 0 0 0 128.0 152.0 3.0 5.0 0.0 429.0 5.0 429.0 85.0 35.0 0 0 0 0 0 t 0 0 0 89.0 1.0 0.0 3.0 40.0 16.0 429.0 11.0 429.0 226.0 0 0 0 0 0
MA1493.1_shift3 (HES6)				; local_words_7nt_m44 versus MA1493.1 (HES6); m=31/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.484539; ---GGCACGTGTy----- ; cor=; Ncor= a 0 0 0 12.0 16.0 17.0 439.0 2.0 10.0 0.0 0.0 33.0 79.0 0 0 0 0 0 c 0 0 0 39.0 35.0 439.0 0.0 439.0 12.0 7.0 0.0 21.0 152.0 0 0 0 0 0 g 0 0 0 439.0 439.0 19.0 9.0 9.0 439.0 29.0 439.0 0.0 0.0 0 0 0 0 0 t 0 0 0 43.0 13.0 15.0 11.0 16.0 0.0 439.0 0.0 439.0 209.0 0 0 0 0 0
MA0048.2_shift3 (NHLH1)				; local_words_7nt_m44 versus MA0048.2 (NHLH1); m=32/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.482387; ---cGCAGCTGCk----- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0
MA1570.1_rc_shift3 (TFAP4(var.2)_rc)				; local_words_7nt_m44 versus MA1570.1_rc (TFAP4(var.2)_rc); m=33/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.476306; ---amCAyrTGdt----- ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 0 0 0 0 0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 0 0 0 0 0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 0 0 0 0 0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0 0 0 0 0 0
MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)				; local_words_7nt_m44 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=34/35; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.47512; ---csCAGCTGsg----- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0
MA0626.1_shift3 (Npas2)				; local_words_7nt_m44 versus MA0626.1 (Npas2); m=35/35; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.466855; ---dsCACGTGtm----- ; cor=; Ncor= a 0 0 0 273.0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 297.0 0 0 0 0 0 c 0 0 0 177.0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 299.0 0 0 0 0 0 g 0 0 0 293.0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 202.0 0 0 0 0 0 t 0 0 0 257.0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 202.0 0 0 0 0 0