One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m48/peak-motifs_local_words_7nt_m48.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m48/peak-motifs_local_words_7nt_m48_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m48_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m48_shift0 (local_words_7nt_m48local_words_7nt_m48)
; local_words_7nt_m48 (local_words_7nt_m48local_words_7nt_m48); m=0 (reference); ncol1=24; shift=0; ncol=24; msctGCacCTGCCAGCTGTCACys ; Alignment reference a 21 14 7 15 6 4 44 4 9 4 0 4 1 71 3 0 1 0 3 1 52 3 13 13 c 30 24 44 12 5 59 14 48 55 2 7 58 69 0 5 68 0 2 4 70 10 50 27 21 g 16 22 16 8 59 7 3 17 4 4 61 7 1 1 65 2 0 71 5 1 0 7 14 24 t 6 13 6 38 3 3 12 4 5 63 5 4 2 1 0 3 72 0 61 1 11 13 19 15

MA0796.1_rc_shift9 (TGIF1_rc)
; local_words_7nt_m48 versus MA0796.1_rc (TGIF1_rc); m=1/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.44385; ---------TGACAGCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 c 0 0 0 0 0 0 0 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 g 0 0 0 0 0 0 0 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 t 0 0 0 0 0 0 0 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0

MA0797.1_rc_shift9 (TGIF2_rc)
; local_words_7nt_m48 versus MA0797.1_rc (TGIF2_rc); m=2/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.438785; ---------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 c 0 0 0 0 0 0 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 g 0 0 0 0 0 0 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 t 0 0 0 0 0 0 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0

MA1571.1_rc_shift9 (TGIF2LX_rc)
; local_words_7nt_m48 versus MA1571.1_rc (TGIF2LX_rc); m=3/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.438224; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 c 0 0 0 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 g 0 0 0 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 t 0 0 0 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0

MA1572.1_shift9 (TGIF2LY)
; local_words_7nt_m48 versus MA1572.1 (TGIF2LY); m=4/8; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.432667; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 c 0 0 0 0 0 0 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 g 0 0 0 0 0 0 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 t 0 0 0 0 0 0 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0

MA0783.1_rc_shift9 (PKNOX2_rc)
; local_words_7nt_m48 versus MA0783.1_rc (PKNOX2_rc); m=5/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.421423; ---------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 c 0 0 0 0 0 0 0 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 g 0 0 0 0 0 0 0 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 t 0 0 0 0 0 0 0 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0

MA1485.1_shift8 (FERD3L)
; local_words_7nt_m48 versus MA1485.1 (FERD3L); m=6/8; ncol2=14; w=14; offset=8; strand=D; shift=8; score=0.421062; --------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA1631.1_shift2 (ASCL1(var.2))
; local_words_7nt_m48 versus MA1631.1 (ASCL1(var.2)); m=7/8; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.415117; --cdgCACCTGCysc--------- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0 0 0 0

MA0830.2_shift2 (TCF4)
; local_words_7nt_m48 versus MA0830.2 (TCF4); m=8/8; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.41022; --cggCACCTGccss--------- ; cor=; Ncor= a 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 0 0 0 0 0 c 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 0 0 0 0 0 g 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 0 0 0 0 0 t 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m48_shift0 (local_words_7nt_m48local_words_7nt_m48)				; local_words_7nt_m48 (local_words_7nt_m48local_words_7nt_m48); m=0 (reference); ncol1=24; shift=0; ncol=24; msctGCacCTGCCAGCTGTCACys ; Alignment reference a 21 14 7 15 6 4 44 4 9 4 0 4 1 71 3 0 1 0 3 1 52 3 13 13 c 30 24 44 12 5 59 14 48 55 2 7 58 69 0 5 68 0 2 4 70 10 50 27 21 g 16 22 16 8 59 7 3 17 4 4 61 7 1 1 65 2 0 71 5 1 0 7 14 24 t 6 13 6 38 3 3 12 4 5 63 5 4 2 1 0 3 72 0 61 1 11 13 19 15
MA0796.1_rc_shift9 (TGIF1_rc)				; local_words_7nt_m48 versus MA0796.1_rc (TGIF1_rc); m=1/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.44385; ---------TGACAGCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 0 c 0 0 0 0 0 0 0 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 0 g 0 0 0 0 0 0 0 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 0 t 0 0 0 0 0 0 0 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0 0
MA0797.1_rc_shift9 (TGIF2_rc)				; local_words_7nt_m48 versus MA0797.1_rc (TGIF2_rc); m=2/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.438785; ---------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 0 c 0 0 0 0 0 0 0 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 0 g 0 0 0 0 0 0 0 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 0 t 0 0 0 0 0 0 0 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0 0
MA1571.1_rc_shift9 (TGIF2LX_rc)				; local_words_7nt_m48 versus MA1571.1_rc (TGIF2LX_rc); m=3/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.438224; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 0 c 0 0 0 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 0 g 0 0 0 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 0 t 0 0 0 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0 0
MA1572.1_shift9 (TGIF2LY)				; local_words_7nt_m48 versus MA1572.1 (TGIF2LY); m=4/8; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.432667; ---------TGACAgcTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 0 c 0 0 0 0 0 0 0 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 0 g 0 0 0 0 0 0 0 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 0 t 0 0 0 0 0 0 0 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0 0
MA0783.1_rc_shift9 (PKNOX2_rc)				; local_words_7nt_m48 versus MA0783.1_rc (PKNOX2_rc); m=5/8; ncol2=12; w=12; offset=9; strand=R; shift=9; score=0.421423; ---------TGACAsCTGTCA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 c 0 0 0 0 0 0 0 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 g 0 0 0 0 0 0 0 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 t 0 0 0 0 0 0 0 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0
MA1485.1_shift8 (FERD3L)				; local_words_7nt_m48 versus MA1485.1 (FERD3L); m=6/8; ncol2=14; w=14; offset=8; strand=D; shift=8; score=0.421062; --------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0
MA1631.1_shift2 (ASCL1(var.2))				; local_words_7nt_m48 versus MA1631.1 (ASCL1(var.2)); m=7/8; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.415117; --cdgCACCTGCysc--------- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 0 0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 0 0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 0 0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0 0 0 0
MA0830.2_shift2 (TCF4)				; local_words_7nt_m48 versus MA0830.2 (TCF4); m=8/8; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.41022; --cggCACCTGccss--------- ; cor=; Ncor= a 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 0 0 0 0 0 c 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 0 0 0 0 0 g 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 0 0 0 0 0 t 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0 0 0 0 0 0