One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m8/peak-motifs_local_words_7nt_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_7nt_m8/peak-motifs_local_words_7nt_m8_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_7nt_m8_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_7nt_m8_shift0 (local_words_7nt_m8local_words_7nt_m8)
; local_words_7nt_m8 (local_words_7nt_m8local_words_7nt_m8); m=0 (reference); ncol1=22; shift=0; ncol=22; gsAACAGGTGCAGCTGTCaCmr ; Alignment reference a 26 28 85 83 4 109 3 2 12 5 0 113 2 3 5 1 3 1 82 7 37 37 c 26 36 15 10 100 4 7 26 4 6 118 1 3 115 2 4 8 104 23 83 40 28 g 44 33 16 26 12 2 106 87 10 109 0 1 114 3 1 115 11 9 12 19 25 34 t 26 25 6 3 6 7 6 7 96 2 4 7 3 1 114 2 100 8 5 13 20 23

MA0499.2_rc_shift0 (MYOD1_rc)
; local_words_7nt_m8 versus MA0499.2_rc (MYOD1_rc); m=1/10; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.486154; rkrACAGGTGcwg--------- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 0 0 0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 0 0 0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 0 0 0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0 0 0 0 0

MA1485.1_shift6 (FERD3L)
; local_words_7nt_m8 versus MA1485.1 (FERD3L); m=2/10; ncol2=14; w=14; offset=6; strand=D; shift=6; score=0.480127; ------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0745.2_rc_shift0 (SNAI2_rc)
; local_words_7nt_m8 versus MA0745.2_rc (SNAI2_rc); m=3/10; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.472642; rykACAGGTGcrt--------- ; cor=; Ncor= a 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 0 0 0 0 0 0 c 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 0 0 0 0 0 0 g 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 0 0 0 0 0 0 t 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0 0 0 0 0 0 0

MA0830.2_rc_shift0 (TCF4_rc)
; local_words_7nt_m8 versus MA0830.2_rc (TCF4_rc); m=4/10; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.451956; ssggCAGGTGccg--------- ; cor=; Ncor= a 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 0 0 0 0 0 0 c 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 0 0 0 0 0 0 g 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 0 0 0 0 0 0 t 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0 0 0 0 0 0 0

MA1631.1_rc_shift0 (ASCL1(var.2)_rc)
; local_words_7nt_m8 versus MA1631.1_rc (ASCL1(var.2)_rc); m=5/10; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.43767; gsrGCAGGTGchg--------- ; cor=; Ncor= a 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 0 0 0 0 0 c 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 0 0 0 0 0 g 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 0 0 0 0 0 t 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0 0 0 0 0 0

MA0500.2_rc_shift7 (MYOG_rc)
; local_words_7nt_m8 versus MA0500.2_rc (MYOG_rc); m=6/10; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.437544; -------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0521.1_rc_shift7 (Tcf12_rc)
; local_words_7nt_m8 versus MA0521.1_rc (Tcf12_rc); m=7/10; ncol2=11; w=11; offset=7; strand=R; shift=7; score=0.435981; -------cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1641.1_rc_shift7 (MYF5_rc)
; local_words_7nt_m8 versus MA1641.1_rc (MYF5_rc); m=8/10; ncol2=12; w=12; offset=7; strand=R; shift=7; score= 0.4242; -------gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift7 (Ptf1a(var.2)_rc)
; local_words_7nt_m8 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/10; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.422454; -------rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1559.1_shift2 (SNAI3)
; local_words_7nt_m8 versus MA1559.1 (SNAI3); m=10/10; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.417832; --arCAGGTGya---------- ; cor=; Ncor= a 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 0 0 0 0 0 0 c 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 0 0 0 0 0 0 g 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_7nt_m8_shift0 (local_words_7nt_m8local_words_7nt_m8)				; local_words_7nt_m8 (local_words_7nt_m8local_words_7nt_m8); m=0 (reference); ncol1=22; shift=0; ncol=22; gsAACAGGTGCAGCTGTCaCmr ; Alignment reference a 26 28 85 83 4 109 3 2 12 5 0 113 2 3 5 1 3 1 82 7 37 37 c 26 36 15 10 100 4 7 26 4 6 118 1 3 115 2 4 8 104 23 83 40 28 g 44 33 16 26 12 2 106 87 10 109 0 1 114 3 1 115 11 9 12 19 25 34 t 26 25 6 3 6 7 6 7 96 2 4 7 3 1 114 2 100 8 5 13 20 23
MA0499.2_rc_shift0 (MYOD1_rc)				; local_words_7nt_m8 versus MA0499.2_rc (MYOD1_rc); m=1/10; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.486154; rkrACAGGTGcwg--------- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 0 0 0 0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 0 0 0 0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 0 0 0 0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0 0 0 0 0 0
MA1485.1_shift6 (FERD3L)				; local_words_7nt_m8 versus MA1485.1 (FERD3L); m=2/10; ncol2=14; w=14; offset=6; strand=D; shift=6; score=0.480127; ------GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0
MA0745.2_rc_shift0 (SNAI2_rc)				; local_words_7nt_m8 versus MA0745.2_rc (SNAI2_rc); m=3/10; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.472642; rykACAGGTGcrt--------- ; cor=; Ncor= a 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 0 0 0 0 0 0 c 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 0 0 0 0 0 0 g 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 0 0 0 0 0 0 t 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0 0 0 0 0 0 0
MA0830.2_rc_shift0 (TCF4_rc)				; local_words_7nt_m8 versus MA0830.2_rc (TCF4_rc); m=4/10; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.451956; ssggCAGGTGccg--------- ; cor=; Ncor= a 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 0 0 0 0 0 0 c 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 0 0 0 0 0 0 g 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 0 0 0 0 0 0 t 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0 0 0 0 0 0 0
MA1631.1_rc_shift0 (ASCL1(var.2)_rc)				; local_words_7nt_m8 versus MA1631.1_rc (ASCL1(var.2)_rc); m=5/10; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.43767; gsrGCAGGTGchg--------- ; cor=; Ncor= a 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 0 0 0 0 0 c 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 0 0 0 0 0 g 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 0 0 0 0 0 t 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0 0 0 0 0 0
MA0500.2_rc_shift7 (MYOG_rc)				; local_words_7nt_m8 versus MA0500.2_rc (MYOG_rc); m=6/10; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.437544; -------sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0
MA0521.1_rc_shift7 (Tcf12_rc)				; local_words_7nt_m8 versus MA0521.1_rc (Tcf12_rc); m=7/10; ncol2=11; w=11; offset=7; strand=R; shift=7; score=0.435981; -------cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
MA1641.1_rc_shift7 (MYF5_rc)				; local_words_7nt_m8 versus MA1641.1_rc (MYF5_rc); m=8/10; ncol2=12; w=12; offset=7; strand=R; shift=7; score= 0.4242; -------gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0
MA1619.1_rc_shift7 (Ptf1a(var.2)_rc)				; local_words_7nt_m8 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=9/10; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.422454; -------rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0
MA1559.1_shift2 (SNAI3)				; local_words_7nt_m8 versus MA1559.1 (SNAI3); m=10/10; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.417832; --arCAGGTGya---------- ; cor=; Ncor= a 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 0 0 0 0 0 0 c 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 0 0 0 0 0 0 g 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0 0 0 0 0 0 0