Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m20/peak-motifs_local_words_8nt_m20.tf
		file1	1	18	1054
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_8nt_m20 MA0499.2 local_words_8nt_m20local_words_8nt_m20 MYOD1 0.805 0.581 18 13 13 18 0.7222 0.7222 1.0000 R 2
local_words_8nt_m20 MA1485.1 local_words_8nt_m20local_words_8nt_m20 FERD3L 0.717 0.558 18 14 14 18 0.7778 0.7778 1.0000 R 2
local_words_8nt_m20 MA0796.1 local_words_8nt_m20local_words_8nt_m20 TGIF1 0.802 0.535 18 12 12 18 0.6667 0.6667 1.0000 D 3
local_words_8nt_m20 MA0500.2 local_words_8nt_m20local_words_8nt_m20 MYOG 0.802 0.535 18 12 12 18 0.6667 0.6667 1.0000 D 3
local_words_8nt_m20 MA1571.1 local_words_8nt_m20local_words_8nt_m20 TGIF2LX 0.802 0.535 18 12 12 18 0.6667 0.6667 1.0000 R 3
local_words_8nt_m20 MA1641.1 local_words_8nt_m20local_words_8nt_m20 MYF5 0.799 0.533 18 12 12 18 0.6667 0.6667 1.0000 D 3
local_words_8nt_m20 MA1572.1 local_words_8nt_m20local_words_8nt_m20 TGIF2LY 0.796 0.531 18 12 12 18 0.6667 0.6667 1.0000 R 3
local_words_8nt_m20 MA0797.1 local_words_8nt_m20local_words_8nt_m20 TGIF2 0.795 0.530 18 12 12 18 0.6667 0.6667 1.0000 D 3
local_words_8nt_m20 MA1619.1 local_words_8nt_m20local_words_8nt_m20 Ptf1a(var.2) 0.789 0.526 18 12 12 18 0.6667 0.6667 1.0000 D 3
local_words_8nt_m20 MA0745.2 local_words_8nt_m20local_words_8nt_m20 SNAI2 0.726 0.524 18 13 13 18 0.7222 0.7222 1.0000 R 2
local_words_8nt_m20 MA0521.1 local_words_8nt_m20local_words_8nt_m20 Tcf12 0.853 0.521 18 11 11 18 0.6111 0.6111 1.0000 D 4
local_words_8nt_m20 MA0783.1 local_words_8nt_m20local_words_8nt_m20 PKNOX2 0.753 0.502 18 12 12 18 0.6667 0.6667 1.0000 D 3
local_words_8nt_m20 MA1100.2 local_words_8nt_m20local_words_8nt_m20 ASCL1 0.854 0.474 18 10 10 18 0.5556 0.5556 1.0000 R 4
local_words_8nt_m20 MA1467.1 local_words_8nt_m20local_words_8nt_m20 ATOH1(var.2) 0.847 0.470 18 10 10 18 0.5556 0.5556 1.0000 D 4
local_words_8nt_m20 MA1635.1 local_words_8nt_m20local_words_8nt_m20 BHLHE22(var.2) 0.837 0.465 18 10 10 18 0.5556 0.5556 1.0000 D 4
local_words_8nt_m20 MA1472.1 local_words_8nt_m20local_words_8nt_m20 BHLHA15(var.2) 0.827 0.459 18 10 10 18 0.5556 0.5556 1.0000 R 4
local_words_8nt_m20 MA0816.1 local_words_8nt_m20local_words_8nt_m20 Ascl2 0.826 0.459 18 10 10 18 0.5556 0.5556 1.0000 D 4
local_words_8nt_m20 MA0048.2 local_words_8nt_m20local_words_8nt_m20 NHLH1 0.754 0.419 18 10 10 18 0.5556 0.5556 1.0000 D 4
local_words_8nt_m20 MA0782.2 local_words_8nt_m20local_words_8nt_m20 PKNOX1 0.717 0.410 18 15 12 21 0.5714 0.6667 0.8000 D -3
local_words_8nt_m20 MA0665.1 local_words_8nt_m20local_words_8nt_m20 MSC 0.734 0.408 18 10 10 18 0.5556 0.5556 1.0000 D 4
local_words_8nt_m20 MA0691.1 local_words_8nt_m20local_words_8nt_m20 TFAP4 0.724 0.402 18 10 10 18 0.5556 0.5556 1.0000 D 4 
 Host name	pedagogix
 Job started	2020-04-14.164535
 Job done	2020-04-14.164600
 Seconds	4.26
	user	4.26
	system	0.45
	cuser	19.57
;	csystem	1.05