Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23.tf
		file1	1	15	1071
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_8nt_m23 MA0499.2 local_words_8nt_m23local_words_8nt_m23 MYOD1 0.908 0.787 15 13 13 15 0.8667 0.8667 1.0000 D 1
local_words_8nt_m23 MA0745.2 local_words_8nt_m23local_words_8nt_m23 SNAI2 0.877 0.760 15 13 13 15 0.8667 0.8667 1.0000 D 1
local_words_8nt_m23 MA1621.1 local_words_8nt_m23local_words_8nt_m23 Rbpjl 0.757 0.706 15 14 14 15 0.9333 0.9333 1.0000 D 0
local_words_8nt_m23 MA0830.2 local_words_8nt_m23local_words_8nt_m23 TCF4 0.783 0.679 15 13 13 15 0.8667 0.8667 1.0000 D 1
local_words_8nt_m23 MA1631.1 local_words_8nt_m23local_words_8nt_m23 ASCL1(var.2) 0.758 0.657 15 13 13 15 0.8667 0.8667 1.0000 D 1
local_words_8nt_m23 MA0521.1 local_words_8nt_m23local_words_8nt_m23 Tcf12 0.822 0.603 15 11 11 15 0.7333 0.7333 1.0000 R 1
local_words_8nt_m23 MA1620.1 local_words_8nt_m23local_words_8nt_m23 Ptf1a(var.3) 0.742 0.594 15 12 12 15 0.8000 0.8000 1.0000 D 1
local_words_8nt_m23 MA1559.1 local_words_8nt_m23local_words_8nt_m23 SNAI3 0.884 0.589 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m23 MA0783.1 local_words_8nt_m23local_words_8nt_m23 PKNOX2 0.714 0.572 15 12 12 15 0.8000 0.8000 1.0000 R 1
local_words_8nt_m23 MA1558.1 local_words_8nt_m23local_words_8nt_m23 SNAI1 0.811 0.541 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m23 MA0103.3 local_words_8nt_m23local_words_8nt_m23 ZEB1 0.713 0.523 15 11 11 15 0.7333 0.7333 1.0000 D 2
local_words_8nt_m23 MA1100.2 local_words_8nt_m23local_words_8nt_m23 ASCL1 0.763 0.509 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m23 MA0820.1 local_words_8nt_m23local_words_8nt_m23 FIGLA 0.751 0.501 15 10 10 15 0.6667 0.6667 1.0000 D 2
local_words_8nt_m23 MA0774.1 local_words_8nt_m23local_words_8nt_m23 MEIS2 0.939 0.501 15 8 8 15 0.5333 0.5333 1.0000 R 6
local_words_8nt_m23 MA0775.1 local_words_8nt_m23local_words_8nt_m23 MEIS3 0.921 0.491 15 8 8 15 0.5333 0.5333 1.0000 R 6
local_words_8nt_m23 MA1635.1 local_words_8nt_m23local_words_8nt_m23 BHLHE22(var.2) 0.706 0.471 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m23 MA1472.1 local_words_8nt_m23local_words_8nt_m23 BHLHA15(var.2) 0.701 0.467 15 10 10 15 0.6667 0.6667 1.0000 D 2
local_words_8nt_m23 MA1114.1 local_words_8nt_m23local_words_8nt_m23 PBX3 0.738 0.443 15 17 12 20 0.6000 0.8000 0.7059 R 3
local_words_8nt_m23 MA0782.2 local_words_8nt_m23local_words_8nt_m23 PKNOX1 0.755 0.437 15 15 11 19 0.5789 0.7333 0.7333 R 4
local_words_8nt_m23 MA0498.2 local_words_8nt_m23local_words_8nt_m23 MEIS1 0.914 0.427 15 7 7 15 0.4667 0.4667 1.0000 R 7 
 Host name	pedagogix
 Job started	2020-04-14.164641
 Job done	2020-04-14.164710
 Seconds	4.31
	user	4.31
	system	0.46
	cuser	23.63
;	csystem	1.08