One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m23/peak-motifs_local_words_8nt_m23_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_8nt_m23_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m23_shift0 (local_words_8nt_m23local_words_8nt_m23)
; local_words_8nt_m23 (local_words_8nt_m23local_words_8nt_m23); m=0 (reference); ncol1=15; shift=0; ncol=20; bcTGCACCTGTCAsy----- ; Alignment reference a 132 152 82 29 5 1031 6 11 3 0 9 3 892 107 189 0 0 0 0 0 c 323 474 32 36 1062 15 743 1047 3 24 42 978 74 403 331 0 0 0 0 0 g 268 265 49 992 2 4 252 7 3 1044 31 57 35 327 265 0 0 0 0 0 t 348 180 908 14 2 21 70 6 1062 3 989 33 70 234 286 0 0 0 0 0

MA0499.2_shift1 (MYOD1)
; local_words_8nt_m23 versus MA0499.2 (MYOD1); m=1/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.786674; -cwgCACCTGTymy------ ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0 0

MA0745.2_shift1 (SNAI2)
; local_words_8nt_m23 versus MA0745.2 (SNAI2); m=2/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.759634; -aygCACCTGTmry------ ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0 0 0 0

MA1621.1_shift0 (Rbpjl)
; local_words_8nt_m23 versus MA1621.1 (Rbpjl); m=3/20; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.706387; svmaCACCTGtsyc------ ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0 0 0

MA0830.2_shift1 (TCF4)
; local_words_8nt_m23 versus MA0830.2 (TCF4); m=4/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.678577; -cggCACCTGccss------ ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0 0 0

MA1631.1_shift1 (ASCL1(var.2))
; local_words_8nt_m23 versus MA1631.1 (ASCL1(var.2)); m=5/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.657041; -cdgCACCTGCysc------ ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; local_words_8nt_m23 versus MA0521.1_rc (Tcf12_rc); m=6/20; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.602931; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0

MA1620.1_shift1 (Ptf1a(var.3))
; local_words_8nt_m23 versus MA1620.1 (Ptf1a(var.3)); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.59392; -rmaCACCTGtky------- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0 0 0 0

MA1559.1_rc_shift2 (SNAI3_rc)
; local_words_8nt_m23 versus MA1559.1_rc (SNAI3_rc); m=8/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.589354; --trCACCTGyt-------- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0 0 0 0

MA0783.1_rc_shift1 (PKNOX2_rc)
; local_words_8nt_m23 versus MA0783.1_rc (PKNOX2_rc); m=9/20; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.571539; -TGACAsCTGTCA------- ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0 0

MA1558.1_rc_shift2 (SNAI1_rc)
; local_words_8nt_m23 versus MA1558.1_rc (SNAI1_rc); m=10/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.540502; --yrCACCTGyh-------- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0 0 0 0

MA0103.3_shift2 (ZEB1)
; local_words_8nt_m23 versus MA0103.3 (ZEB1); m=11/20; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.522554; --ssCACCTGsss------- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; local_words_8nt_m23 versus MA1100.2_rc (ASCL1_rc); m=12/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.508661; --rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0

MA0820.1_shift2 (FIGLA)
; local_words_8nt_m23 versus MA0820.1 (FIGLA); m=13/20; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.500979; --wmCACCTGkw-------- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; local_words_8nt_m23 versus MA0774.1_rc (MEIS2_rc); m=14/20; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.500849; ------sCTGTCAa------ ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0 0 0

MA0775.1_rc_shift6 (MEIS3_rc)
; local_words_8nt_m23 versus MA0775.1_rc (MEIS3_rc); m=15/20; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.491155; ------scTGTCAw------ ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; local_words_8nt_m23 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=16/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.470805; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; local_words_8nt_m23 versus MA1472.1 (BHLHA15(var.2)); m=17/20; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.467414; --avCAGCTGyy-------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0 0

MA1114.1_rc_shift3 (PBX3_rc)
; local_words_8nt_m23 versus MA1114.1_rc (PBX3_rc); m=18/20; ncol2=17; w=12; offset=3; strand=R; shift=3; score=0.442645; ---sygcCTGTCACTCAvmc ; cor=; Ncor= a 0 0 0 1508.0 1465.0 1525.0 683.0 549.0 376.0 138.0 145.0 83.0 6290.0 969.0 256.0 160.0 5697.0 1924.0 1853.0 1523.0 c 0 0 0 2217.0 2068.0 1591.0 4077.0 5691.0 425.0 209.0 604.0 6550.0 285.0 4929.0 214.0 6406.0 503.0 1928.0 1934.0 2192.0 g 0 0 0 1801.0 1619.0 2654.0 1377.0 412.0 129.0 6524.0 108.0 242.0 199.0 788.0 125.0 227.0 225.0 1849.0 1724.0 1711.0 t 0 0 0 1495.0 1869.0 1251.0 884.0 369.0 6091.0 150.0 6164.0 146.0 247.0 335.0 6426.0 228.0 596.0 1320.0 1510.0 1595.0

MA0782.2_rc_shift4 (PKNOX1_rc)
; local_words_8nt_m23 versus MA0782.2_rc (PKNOX1_rc); m=19/20; ncol2=15; w=11; offset=4; strand=R; shift=4; score=0.437017; ----yagCTGTCAcTCAwa- ; cor=; Ncor= a 0 0 0 0 9877.0 12900.0 6042.0 5092.0 2629.0 886.0 720.0 691.0 36918.0 7333.0 1196.0 1043.0 29794.0 10355.0 11050.0 0 c 0 0 0 0 10296.0 9060.0 9128.0 27367.0 2408.0 580.0 2459.0 37713.0 1027.0 26182.0 1330.0 36106.0 3322.0 9535.0 9599.0 0 g 0 0 0 0 9268.0 9386.0 16341.0 4759.0 944.0 37846.0 410.0 1004.0 878.0 4123.0 678.0 1160.0 1625.0 9828.0 9503.0 0 t 0 0 0 0 10522.0 8617.0 8452.0 2745.0 33982.0 651.0 36374.0 555.0 1140.0 2325.0 36759.0 1654.0 5222.0 10245.0 9811.0 0

MA0498.2_rc_shift7 (MEIS1_rc)
; local_words_8nt_m23 versus MA0498.2_rc (MEIS1_rc); m=20/20; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.426539; -------cTGTCAw------ ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_8nt_m23_shift0 (local_words_8nt_m23local_words_8nt_m23)				; local_words_8nt_m23 (local_words_8nt_m23local_words_8nt_m23); m=0 (reference); ncol1=15; shift=0; ncol=20; bcTGCACCTGTCAsy----- ; Alignment reference a 132 152 82 29 5 1031 6 11 3 0 9 3 892 107 189 0 0 0 0 0 c 323 474 32 36 1062 15 743 1047 3 24 42 978 74 403 331 0 0 0 0 0 g 268 265 49 992 2 4 252 7 3 1044 31 57 35 327 265 0 0 0 0 0 t 348 180 908 14 2 21 70 6 1062 3 989 33 70 234 286 0 0 0 0 0
MA0499.2_shift1 (MYOD1)				; local_words_8nt_m23 versus MA0499.2 (MYOD1); m=1/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.786674; -cwgCACCTGTymy------ ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 0 0 0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 0 0 0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 0 0 0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0 0 0 0 0
MA0745.2_shift1 (SNAI2)				; local_words_8nt_m23 versus MA0745.2 (SNAI2); m=2/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.759634; -aygCACCTGTmry------ ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 0 0 0 0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 0 0 0 0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 0 0 0 0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0 0 0 0 0 0
MA1621.1_shift0 (Rbpjl)				; local_words_8nt_m23 versus MA1621.1 (Rbpjl); m=3/20; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.706387; svmaCACCTGtsyc------ ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 0 0 0 0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 0 0 0 0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 0 0 0 0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0 0 0 0 0 0
MA0830.2_shift1 (TCF4)				; local_words_8nt_m23 versus MA0830.2 (TCF4); m=4/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.678577; -cggCACCTGccss------ ; cor=; Ncor= a 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 0 0 0 0 c 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 0 0 0 0 g 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 0 0 0 0 t 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0 0 0 0 0
MA1631.1_shift1 (ASCL1(var.2))				; local_words_8nt_m23 versus MA1631.1 (ASCL1(var.2)); m=5/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.657041; -cdgCACCTGCysc------ ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 0 0 0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 0 0 0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 0 0 0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0 0 0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; local_words_8nt_m23 versus MA0521.1_rc (Tcf12_rc); m=6/20; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.602931; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0
MA1620.1_shift1 (Ptf1a(var.3))				; local_words_8nt_m23 versus MA1620.1 (Ptf1a(var.3)); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.59392; -rmaCACCTGtky------- ; cor=; Ncor= a 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 0 0 0 0 c 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 0 0 0 0 g 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 0 0 0 0 t 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0 0 0 0 0
MA1559.1_rc_shift2 (SNAI3_rc)				; local_words_8nt_m23 versus MA1559.1_rc (SNAI3_rc); m=8/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.589354; --trCACCTGyt-------- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 0 0 0 0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 0 0 0 0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 0 0 0 0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0 0 0 0 0 0 0
MA0783.1_rc_shift1 (PKNOX2_rc)				; local_words_8nt_m23 versus MA0783.1_rc (PKNOX2_rc); m=9/20; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.571539; -TGACAsCTGTCA------- ; cor=; Ncor= a 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 0 0 0 0 0 c 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 0 0 0 0 0 g 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 0 0 0 0 0 t 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0 0 0 0 0 0
MA1558.1_rc_shift2 (SNAI1_rc)				; local_words_8nt_m23 versus MA1558.1_rc (SNAI1_rc); m=10/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.540502; --yrCACCTGyh-------- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 0 0 0 0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 0 0 0 0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 0 0 0 0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0 0 0 0 0 0 0
MA0103.3_shift2 (ZEB1)				; local_words_8nt_m23 versus MA0103.3 (ZEB1); m=11/20; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.522554; --ssCACCTGsss------- ; cor=; Ncor= a 0 0 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 0 0 0 0 0 0 c 0 0 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 0 0 0 0 0 0 g 0 0 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 0 0 0 0 0 0 t 0 0 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0 0 0 0 0 0 0
MA1100.2_rc_shift2 (ASCL1_rc)				; local_words_8nt_m23 versus MA1100.2_rc (ASCL1_rc); m=12/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.508661; --rgCAGCTGyy-------- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0 0
MA0820.1_shift2 (FIGLA)				; local_words_8nt_m23 versus MA0820.1 (FIGLA); m=13/20; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.500979; --wmCACCTGkw-------- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0 0 0 0
MA0774.1_rc_shift6 (MEIS2_rc)				; local_words_8nt_m23 versus MA0774.1_rc (MEIS2_rc); m=14/20; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.500849; ------sCTGTCAa------ ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 0 0 0 0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 0 0 0 0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 0 0 0 0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0 0 0 0 0 0
MA0775.1_rc_shift6 (MEIS3_rc)				; local_words_8nt_m23 versus MA0775.1_rc (MEIS3_rc); m=15/20; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.491155; ------scTGTCAw------ ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 0 0 0 0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 0 0 0 0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0 0 0 0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; local_words_8nt_m23 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=16/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.470805; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0 0
MA1472.1_shift2 (BHLHA15(var.2))				; local_words_8nt_m23 versus MA1472.1 (BHLHA15(var.2)); m=17/20; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.467414; --avCAGCTGyy-------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0 0
MA1114.1_rc_shift3 (PBX3_rc)				; local_words_8nt_m23 versus MA1114.1_rc (PBX3_rc); m=18/20; ncol2=17; w=12; offset=3; strand=R; shift=3; score=0.442645; ---sygcCTGTCACTCAvmc ; cor=; Ncor= a 0 0 0 1508.0 1465.0 1525.0 683.0 549.0 376.0 138.0 145.0 83.0 6290.0 969.0 256.0 160.0 5697.0 1924.0 1853.0 1523.0 c 0 0 0 2217.0 2068.0 1591.0 4077.0 5691.0 425.0 209.0 604.0 6550.0 285.0 4929.0 214.0 6406.0 503.0 1928.0 1934.0 2192.0 g 0 0 0 1801.0 1619.0 2654.0 1377.0 412.0 129.0 6524.0 108.0 242.0 199.0 788.0 125.0 227.0 225.0 1849.0 1724.0 1711.0 t 0 0 0 1495.0 1869.0 1251.0 884.0 369.0 6091.0 150.0 6164.0 146.0 247.0 335.0 6426.0 228.0 596.0 1320.0 1510.0 1595.0
MA0782.2_rc_shift4 (PKNOX1_rc)				; local_words_8nt_m23 versus MA0782.2_rc (PKNOX1_rc); m=19/20; ncol2=15; w=11; offset=4; strand=R; shift=4; score=0.437017; ----yagCTGTCAcTCAwa- ; cor=; Ncor= a 0 0 0 0 9877.0 12900.0 6042.0 5092.0 2629.0 886.0 720.0 691.0 36918.0 7333.0 1196.0 1043.0 29794.0 10355.0 11050.0 0 c 0 0 0 0 10296.0 9060.0 9128.0 27367.0 2408.0 580.0 2459.0 37713.0 1027.0 26182.0 1330.0 36106.0 3322.0 9535.0 9599.0 0 g 0 0 0 0 9268.0 9386.0 16341.0 4759.0 944.0 37846.0 410.0 1004.0 878.0 4123.0 678.0 1160.0 1625.0 9828.0 9503.0 0 t 0 0 0 0 10522.0 8617.0 8452.0 2745.0 33982.0 651.0 36374.0 555.0 1140.0 2325.0 36759.0 1654.0 5222.0 10245.0 9811.0 0
MA0498.2_rc_shift7 (MEIS1_rc)				; local_words_8nt_m23 versus MA0498.2_rc (MEIS1_rc); m=20/20; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.426539; -------cTGTCAw------ ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0 0 0 0 0 0 0