One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m29/peak-motifs_local_words_8nt_m29.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m29/peak-motifs_local_words_8nt_m29_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_8nt_m29_shift0 ; 21 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
local_words_8nt_m29_shift0 (local_words_8nt_m29local_words_8nt_m29)     
; local_words_8nt_m29 (local_words_8nt_m29local_words_8nt_m29); m=0 (reference); ncol1=15; shift=0; ncol=17; scTGCAsCTGCTGyb--
; Alignment reference
a	284	209	119	23	11	1522	14	20	61	7	4	23	33	205	267	0	0
c	446	898	28	63	1615	40	1116	1591	9	5	1556	24	134	678	471	0	0
g	569	295	82	1541	13	14	487	17	8	1623	20	12	1433	322	443	0	0
t	345	242	1415	17	5	68	27	16	1566	9	64	1585	44	439	463	0	0
MA1631.1_shift1 (ASCL1(var.2)) 
; local_words_8nt_m29 versus MA1631.1 (ASCL1(var.2)); m=1/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.71875; -cdgCACCTGCysc---
; cor=; Ncor=
a	0	6833.0	8952.0	5836.0	184.0	32315.0	163.0	196.0	368.0	251.0	399.0	4490.0	7083.0	5972.0	0	0	0
c	0	11805.0	7998.0	6654.0	33562.0	563.0	30169.0	33402.0	740.0	445.0	28844.0	17883.0	10555.0	11996.0	0	0	0
g	0	8371.0	8601.0	18576.0	321.0	860.0	3209.0	607.0	492.0	33411.0	2719.0	2966.0	8939.0	8356.0	0	0	0
t	0	7347.0	8805.0	3290.0	289.0	618.0	815.0	151.0	32756.0	249.0	2394.0	9017.0	7779.0	8032.0	0	0	0
MA0830.2_shift1 (TCF4) 
; local_words_8nt_m29 versus MA0830.2 (TCF4); m=2/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.709795; -cggCACCTGccss---
; cor=; Ncor=
a	0	6048.0	7034.0	4168.0	243.0	27023.0	216.0	356.0	372.0	251.0	1694.0	5534.0	6413.0	5133.0	0	0	0
c	0	10052.0	6754.0	5062.0	28686.0	635.0	26765.0	27724.0	1016.0	540.0	18935.0	12872.0	8658.0	9843.0	0	0	0
g	0	7140.0	8618.0	18498.0	321.0	1295.0	1733.0	1197.0	679.0	28432.0	5281.0	4933.0	7964.0	7662.0	0	0	0
t	0	6225.0	7059.0	1737.0	215.0	512.0	751.0	188.0	27398.0	242.0	3555.0	6126.0	6430.0	6827.0	0	0	0
MA1628.1_rc_shift4 (Zic1::Zic2_rc) 
; local_words_8nt_m29 versus MA1628.1_rc (Zic1::Zic2_rc); m=3/20; ncol2=11; w=11; offset=4; strand=R; shift=4; score=0.630422; ----ysCCTGCTGbg--
; cor=; Ncor=
a	0	0	0	0	1708.0	2172.0	124.0	90.0	4.0	428.0	74.0	4.0	163.0	1473.0	994.0	0	0
c	0	0	0	0	3506.0	2775.0	9631.0	9279.0	627.0	96.0	9527.0	266.0	106.0	2773.0	2206.0	0	0
g	0	0	0	0	2154.0	2516.0	91.0	512.0	311.0	9293.0	195.0	384.0	9594.0	2589.0	4620.0	0	0
t	0	0	0	0	2524.0	2429.0	46.0	11.0	8950.0	75.0	96.0	9238.0	29.0	3057.0	2072.0	0	0
MA0745.2_shift1 (SNAI2) 
; local_words_8nt_m29 versus MA0745.2 (SNAI2); m=4/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.619391; -aygCACCTGTmry---
; cor=; Ncor=
a	0	14658.0	7668.0	10322.0	408.0	44963.0	112.0	246.0	78.0	179.0	814.0	12017.0	13586.0	6215.0	0	0	0
c	0	10031.0	12314.0	6393.0	44463.0	202.0	45144.0	44739.0	313.0	254.0	6467.0	18771.0	11016.0	13476.0	0	0	0
g	0	11169.0	9490.0	26742.0	323.0	424.0	326.0	487.0	196.0	45257.0	1263.0	6281.0	12297.0	8219.0	0	0	0
t	0	9958.0	16344.0	2359.0	622.0	227.0	234.0	344.0	45229.0	126.0	37272.0	8747.0	8917.0	17906.0	0	0	0
MA0499.2_shift1 (MYOD1) 
; local_words_8nt_m29 versus MA0499.2 (MYOD1); m=5/20; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.609073; -cwgCACCTGTymy---
; cor=; Ncor=
a	0	7175.0	9462.0	4549.0	349.0	32281.0	463.0	534.0	241.0	208.0	402.0	1808.0	9462.0	5687.0	0	0	0
c	0	11279.0	7103.0	5622.0	33328.0	583.0	25275.0	32504.0	563.0	386.0	2555.0	19052.0	10485.0	11760.0	0	0	0
g	0	8118.0	8444.0	21884.0	354.0	849.0	7336.0	932.0	366.0	33468.0	1699.0	4440.0	6202.0	7495.0	0	0	0
t	0	7728.0	9291.0	2245.0	269.0	587.0	1226.0	330.0	33130.0	238.0	29644.0	9000.0	8151.0	9358.0	0	0	0
MA1648.1_shift2 (TCF12(var.2)) 
; local_words_8nt_m29 versus MA1648.1 (TCF12(var.2)); m=6/20; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.590707; --ssCACCTGCys----
; cor=; Ncor=
a	0	0	13014.0	14835.0	955.0	52529.0	744.0	1913.0	1380.0	2819.0	1089.0	13867.0	11414.0	0	0	0	0
c	0	0	19393.0	17594.0	57848.0	2007.0	55598.0	55765.0	3886.0	2088.0	55061.0	17603.0	18154.0	0	0	0	0
g	0	0	16996.0	18560.0	1186.0	5607.0	3780.0	3536.0	2625.0	55922.0	2314.0	14293.0	20060.0	0	0	0	0
t	0	0	12473.0	10887.0	1887.0	1733.0	1754.0	662.0	53985.0	1047.0	3412.0	16113.0	12248.0	0	0	0	0
MA0500.2_shift1 (MYOG) 
; local_words_8nt_m29 versus MA0500.2 (MYOG); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.589795; -sarCAGCTGyts----
; cor=; Ncor=
a	0	5310.0	8428.0	7159.0	86.0	21782.0	95.0	167.0	163.0	182.0	1667.0	4667.0	5018.0	0	0	0	0
c	0	6381.0	3754.0	2730.0	21988.0	176.0	130.0	21964.0	238.0	102.0	10792.0	5497.0	5660.0	0	0	0	0
g	0	5596.0	5483.0	10790.0	101.0	236.0	21963.0	131.0	179.0	21985.0	2706.0	3718.0	6369.0	0	0	0	0
t	0	5070.0	4692.0	1678.0	182.0	163.0	169.0	95.0	21777.0	88.0	7192.0	8475.0	5310.0	0	0	0	0
MA0522.3_shift2 (TCF3) 
; local_words_8nt_m29 versus MA0522.3 (TCF3); m=8/20; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.581801; --svCACCTGCss----
; cor=; Ncor=
a	0	0	6270.0	8032.0	469.0	28916.0	309.0	1127.0	380.0	1089.0	295.0	7276.0	5485.0	0	0	0	0
c	0	0	10212.0	9269.0	29379.0	396.0	28640.0	27199.0	2003.0	1038.0	28742.0	8727.0	10122.0	0	0	0	0
g	0	0	8539.0	9432.0	708.0	1574.0	1362.0	2652.0	1339.0	28642.0	987.0	8025.0	9222.0	0	0	0	0
t	0	0	6240.0	4528.0	705.0	375.0	950.0	283.0	27539.0	492.0	1237.0	7233.0	6432.0	0	0	0	0
MA1559.1_rc_shift2 (SNAI3_rc) 
; local_words_8nt_m29 versus MA1559.1_rc (SNAI3_rc); m=9/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.578502; --trCACCTGyt-----
; cor=; Ncor=
a	0	0	553.0	3161.0	30.0	6248.0	0.0	43.0	3.0	35.0	183.0	1110.0	0	0	0	0	0
c	0	0	1569.0	1701.0	6248.0	28.0	6248.0	6248.0	34.0	0.0	2331.0	1525.0	0	0	0	0	0
g	0	0	688.0	6248.0	0.0	12.0	18.0	29.0	0.0	6248.0	0.0	661.0	0	0	0	0	0
t	0	0	4680.0	432.0	94.0	0.0	0.0	118.0	6248.0	23.0	3917.0	2952.0	0	0	0	0	0
MA0521.1_rc_shift1 (Tcf12_rc) 
; local_words_8nt_m29 versus MA0521.1_rc (Tcf12_rc); m=10/20; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.564079; -cwsCAGCTGYy-----
; cor=; Ncor=
a	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0	0	0	0
c	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0	0	0	0
g	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0	0	0	0
t	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0	0	0	0
MA1558.1_rc_shift2 (SNAI1_rc) 
; local_words_8nt_m29 versus MA1558.1_rc (SNAI1_rc); m=11/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.551387; --yrCACCTGyh-----
; cor=; Ncor=
a	0	0	6356.0	9044.0	311.0	19982.0	28.0	306.0	568.0	340.0	3518.0	5112.0	0	0	0	0	0
c	0	0	9894.0	5306.0	19982.0	42.0	19982.0	19982.0	91.0	275.0	12989.0	6410.0	0	0	0	0	0
g	0	0	4592.0	10938.0	0.0	0.0	5.0	517.0	297.0	19982.0	501.0	3187.0	0	0	0	0	0
t	0	0	10088.0	1639.0	706.0	38.0	72.0	1766.0	19982.0	446.0	6993.0	5274.0	0	0	0	0	0
MA1100.2_rc_shift2 (ASCL1_rc) 
; local_words_8nt_m29 versus MA1100.2_rc (ASCL1_rc); m=12/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.539506; --rgCAGCTGyy-----
; cor=; Ncor=
a	0	0	1194.0	1349.0	29.0	4413.0	20.0	625.0	218.0	14.0	354.0	726.0	0	0	0	0	0
c	0	0	889.0	814.0	4413.0	121.0	1320.0	4413.0	60.0	0.0	3079.0	1495.0	0	0	0	0	0
g	0	0	1487.0	3065.0	0.0	24.0	4413.0	1288.0	157.0	4413.0	521.0	926.0	0	0	0	0	0
t	0	0	843.0	177.0	52.0	118.0	729.0	107.0	4413.0	0.0	1334.0	1267.0	0	0	0	0	0
MA0103.3_shift2 (ZEB1) 
; local_words_8nt_m29 versus MA0103.3 (ZEB1); m=13/20; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.538037; --ssCACCTGsss----
; cor=; Ncor=
a	0	0	3211.0	4685.0	114.0	19905.0	32.0	193.0	4.0	441.0	1982.0	4258.0	3490.0	0	0	0	0
c	0	0	7998.0	5550.0	19195.0	0.0	19878.0	19257.0	501.0	178.0	9561.0	6117.0	6955.0	0	0	0	0
g	0	0	5228.0	5179.0	158.0	223.0	97.0	649.0	355.0	19381.0	5178.0	6601.0	5828.0	0	0	0	0
t	0	0	3692.0	4715.0	662.0	1.0	122.0	30.0	19269.0	129.0	3408.0	3153.0	3856.0	0	0	0	0
MA1629.1_rc_shift3 (Zic2_rc) 
; local_words_8nt_m29 versus MA1629.1_rc (Zic2_rc); m=14/20; ncol2=14; w=12; offset=3; strand=R; shift=3; score=0.535139; ---cyyCCTGCTGtGmk
; cor=; Ncor=
a	0	0	0	2104.0	1641.0	2472.0	154.0	410.0	441.0	298.0	67.0	268.0	120.0	2437.0	240.0	3893.0	2506.0
c	0	0	0	5314.0	4979.0	4911.0	11465.0	11184.0	735.0	269.0	11484.0	186.0	188.0	829.0	585.0	3821.0	2761.0
g	0	0	0	2168.0	1661.0	1476.0	204.0	133.0	118.0	11272.0	228.0	391.0	11476.0	1765.0	9933.0	1755.0	3507.0
t	0	0	0	2333.0	3638.0	3060.0	96.0	192.0	10625.0	80.0	140.0	11074.0	135.0	6888.0	1161.0	2450.0	3145.0
MA0816.1_rc_shift2 (Ascl2_rc) 
; local_words_8nt_m29 versus MA0816.1_rc (Ascl2_rc); m=15/20; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.523607; --rrCAGCTGyt-----
; cor=; Ncor=
a	0	0	199.0	94.0	2.0	300.0	1.0	18.0	15.0	1.0	1.0	16.0	0	0	0	0	0
c	0	0	28.0	15.0	300.0	0.0	2.0	300.0	0.0	0.0	172.0	63.0	0	0	0	0	0
g	0	0	101.0	206.0	1.0	0.0	300.0	23.0	0.0	300.0	41.0	36.0	0	0	0	0	0
t	0	0	34.0	6.0	0.0	4.0	3.0	7.0	300.0	3.0	128.0	237.0	0	0	0	0	0
MA0048.2_shift2 (NHLH1) 
; local_words_8nt_m29 versus MA0048.2 (NHLH1); m=16/20; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.518195; --cGCAGCTGCk-----
; cor=; Ncor=
a	0	0	788.0	461.0	3.0	2166.0	0.0	96.0	0.0	2.0	296.0	308.0	0	0	0	0	0
c	0	0	2166.0	179.0	2166.0	3.0	301.0	2166.0	4.0	4.0	2166.0	736.0	0	0	0	0	0
g	0	0	181.0	2166.0	0.0	1.0	2166.0	124.0	4.0	2166.0	102.0	2166.0	0	0	0	0	0
t	0	0	111.0	142.0	0.0	0.0	114.0	0.0	2166.0	1.0	350.0	1489.0	0	0	0	0	0
MA1485.1_shift3 (FERD3L) 
; local_words_8nt_m29 versus MA1485.1 (FERD3L); m=17/20; ncol2=14; w=12; offset=3; strand=D; shift=3; score=0.511461; ---GyrmCAGCTGTyAC
; cor=; Ncor=
a	0	0	0	2158.0	450.0	14384.0	15390.0	36.0	29605.0	0.0	3649.0	81.0	0.0	1268.0	103.0	29605.0	0.0
c	0	0	0	68.0	20049.0	2443.0	9363.0	29605.0	126.0	841.0	29605.0	129.0	0.0	3878.0	8664.0	809.0	29605.0
g	0	0	0	29605.0	348.0	12703.0	3142.0	0.0	118.0	29605.0	471.0	210.0	29605.0	3395.0	5920.0	9815.0	0.0
t	0	0	0	225.0	9557.0	74.0	1710.0	0.0	144.0	4691.0	0.0	29605.0	0.0	21065.0	14919.0	958.0	48.0
MA1472.1_shift5 (BHLHA15(var.2)) 
; local_words_8nt_m29 versus MA1472.1 (BHLHA15(var.2)); m=18/20; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.483046; -----avCAGCTGyy--
; cor=; Ncor=
a	0	0	0	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0	0
c	0	0	0	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0	0
g	0	0	0	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0	0
t	0	0	0	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0	0
MA0820.1_shift2 (FIGLA) 
; local_words_8nt_m29 versus MA0820.1 (FIGLA); m=19/20; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.481427; --wmCACCTGkw-----
; cor=; Ncor=
a	0	0	886.0	690.0	0.0	1780.0	0.0	9.0	56.0	36.0	154.0	455.0	0	0	0	0	0
c	0	0	270.0	693.0	1780.0	46.0	1780.0	1780.0	0.0	33.0	225.0	283.0	0	0	0	0	0
g	0	0	175.0	160.0	0.0	0.0	527.0	311.0	17.0	1780.0	569.0	289.0	0	0	0	0	0
t	0	0	449.0	237.0	29.0	14.0	0.0	0.0	1780.0	65.0	832.0	753.0	0	0	0	0	0
MA1635.1_shift2 (BHLHE22(var.2)) 
; local_words_8nt_m29 versus MA1635.1 (BHLHE22(var.2)); m=20/20; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.480801; --csCAGCTGsg-----
; cor=; Ncor=
a	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0	0	0	0	0
c	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0	0	0	0	0
g	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0	0	0	0	0
t	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0	0	0	0	0