One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m30/peak-motifs_local_words_8nt_m30.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m30/peak-motifs_local_words_8nt_m30_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_8nt_m30_shift0 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m30_shift0 (local_words_8nt_m30local_words_8nt_m30)
; local_words_8nt_m30 (local_words_8nt_m30local_words_8nt_m30); m=0 (reference); ncol1=19; shift=0; ncol=19; sccaCAGCAGCTGTCAcys ; Alignment reference a 237 265 179 647 59 964 55 7 1033 9 14 3 4 40 24 778 83 231 248 c 349 341 602 172 894 24 60 1068 9 41 1037 6 8 102 919 147 718 386 313 g 306 233 195 151 95 26 952 7 8 1023 27 3 1070 50 88 65 160 181 321 t 196 249 112 118 40 74 21 6 38 15 10 1076 6 896 57 98 127 290 206

MA1485.1_shift3 (FERD3L)
; local_words_8nt_m30 versus MA1485.1 (FERD3L); m=1/17; ncol2=14; w=14; offset=3; strand=D; shift=3; score=0.575423; ---GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0

MA0832.1_rc_shift3 (Tcf21_rc)
; local_words_8nt_m30 versus MA0832.1_rc (Tcf21_rc); m=2/17; ncol2=14; w=14; offset=3; strand=R; shift=3; score=0.558791; ---ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0499.2_shift4 (MYOD1)
; local_words_8nt_m30 versus MA0499.2 (MYOD1); m=3/17; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.552568; ----cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0

MA0500.2_rc_shift4 (MYOG_rc)
; local_words_8nt_m30 versus MA0500.2_rc (MYOG_rc); m=4/17; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.518794; ----sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0521.1_rc_shift4 (Tcf12_rc)
; local_words_8nt_m30 versus MA0521.1_rc (Tcf12_rc); m=5/17; ncol2=11; w=11; offset=4; strand=R; shift=4; score=0.507256; ----cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1641.1_rc_shift4 (MYF5_rc)
; local_words_8nt_m30 versus MA1641.1_rc (MYF5_rc); m=6/17; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.497313; ----gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; local_words_8nt_m30 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/17; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.492486; ----rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0

MA1467.1_shift5 (ATOH1(var.2))
; local_words_8nt_m30 versus MA1467.1 (ATOH1(var.2)); m=8/17; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.467469; -----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0816.1_shift5 (Ascl2)
; local_words_8nt_m30 versus MA0816.1 (Ascl2); m=9/17; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.457557; -----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1472.1_shift5 (BHLHA15(var.2))
; local_words_8nt_m30 versus MA1472.1 (BHLHA15(var.2)); m=10/17; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.452159; -----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0

MA1646.1_shift1 (OSR2)
; local_words_8nt_m30 versus MA1646.1 (OSR2); m=11/17; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.451095; -amaCAGAAGChr------ ; cor=; Ncor= a 0 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 0 0 0 0 c 0 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 0 0 0 0 g 0 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 0 0 0 0 t 0 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0 0 0 0 0

MA1100.2_shift5 (ASCL1)
; local_words_8nt_m30 versus MA1100.2 (ASCL1); m=12/17; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.445359; -----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)
; local_words_8nt_m30 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/17; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.436094; -----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0

MA0665.1_rc_shift5 (MSC_rc)
; local_words_8nt_m30 versus MA0665.1_rc (MSC_rc); m=14/17; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.431879; -----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA0691.1_rc_shift5 (TFAP4_rc)
; local_words_8nt_m30 versus MA0691.1_rc (TFAP4_rc); m=15/17; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.417488; -----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; local_words_8nt_m30 versus MA0048.2_rc (NHLH1_rc); m=16/17; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.41206; -----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA0667.1_shift5 (MYF6)
; local_words_8nt_m30 versus MA0667.1 (MYF6); m=17/17; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.409805; -----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_8nt_m30_shift0 (local_words_8nt_m30local_words_8nt_m30)				; local_words_8nt_m30 (local_words_8nt_m30local_words_8nt_m30); m=0 (reference); ncol1=19; shift=0; ncol=19; sccaCAGCAGCTGTCAcys ; Alignment reference a 237 265 179 647 59 964 55 7 1033 9 14 3 4 40 24 778 83 231 248 c 349 341 602 172 894 24 60 1068 9 41 1037 6 8 102 919 147 718 386 313 g 306 233 195 151 95 26 952 7 8 1023 27 3 1070 50 88 65 160 181 321 t 196 249 112 118 40 74 21 6 38 15 10 1076 6 896 57 98 127 290 206
MA1485.1_shift3 (FERD3L)				; local_words_8nt_m30 versus MA1485.1 (FERD3L); m=1/17; ncol2=14; w=14; offset=3; strand=D; shift=3; score=0.575423; ---GyrmCAGCTGTyAC-- ; cor=; Ncor= a 0 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 0 c 0 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 0 g 0 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 0 t 0 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0 0
MA0832.1_rc_shift3 (Tcf21_rc)				; local_words_8nt_m30 versus MA0832.1_rc (Tcf21_rc); m=2/17; ncol2=14; w=14; offset=3; strand=R; shift=3; score=0.558791; ---ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0
MA0499.2_shift4 (MYOD1)				; local_words_8nt_m30 versus MA0499.2 (MYOD1); m=3/17; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.552568; ----cwgCACCTGTymy-- ; cor=; Ncor= a 0 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 0 c 0 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 0 g 0 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 0 t 0 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0 0
MA0500.2_rc_shift4 (MYOG_rc)				; local_words_8nt_m30 versus MA0500.2_rc (MYOG_rc); m=4/17; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.518794; ----sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0
MA0521.1_rc_shift4 (Tcf12_rc)				; local_words_8nt_m30 versus MA0521.1_rc (Tcf12_rc); m=5/17; ncol2=11; w=11; offset=4; strand=R; shift=4; score=0.507256; ----cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
MA1641.1_rc_shift4 (MYF5_rc)				; local_words_8nt_m30 versus MA1641.1_rc (MYF5_rc); m=6/17; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.497313; ----gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0
MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)				; local_words_8nt_m30 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/17; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.492486; ----rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0
MA1467.1_shift5 (ATOH1(var.2))				; local_words_8nt_m30 versus MA1467.1 (ATOH1(var.2)); m=8/17; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.467469; -----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0
MA0816.1_shift5 (Ascl2)				; local_words_8nt_m30 versus MA0816.1 (Ascl2); m=9/17; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.457557; -----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0
MA1472.1_shift5 (BHLHA15(var.2))				; local_words_8nt_m30 versus MA1472.1 (BHLHA15(var.2)); m=10/17; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.452159; -----avCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0
MA1646.1_shift1 (OSR2)				; local_words_8nt_m30 versus MA1646.1 (OSR2); m=11/17; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.451095; -amaCAGAAGChr------ ; cor=; Ncor= a 0 4437.0 4244.0 8520.0 254.0 13599.0 216.0 11678.0 13725.0 416.0 666.0 4386.0 4048.0 0 0 0 0 0 0 c 0 3641.0 4206.0 2221.0 13937.0 197.0 229.0 703.0 288.0 170.0 12109.0 4274.0 3304.0 0 0 0 0 0 0 g 0 3246.0 3006.0 2117.0 406.0 737.0 14206.0 901.0 516.0 13982.0 841.0 2266.0 4726.0 0 0 0 0 0 0 t 0 3484.0 3352.0 1950.0 211.0 275.0 157.0 1526.0 279.0 240.0 1192.0 3882.0 2730.0 0 0 0 0 0 0
MA1100.2_shift5 (ASCL1)				; local_words_8nt_m30 versus MA1100.2 (ASCL1); m=12/17; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.445359; -----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0
MA1635.1_rc_shift5 (BHLHE22(var.2)_rc)				; local_words_8nt_m30 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=13/17; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.436094; -----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 c 0 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 g 0 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 t 0 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0
MA0665.1_rc_shift5 (MSC_rc)				; local_words_8nt_m30 versus MA0665.1_rc (MSC_rc); m=14/17; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.431879; -----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0
MA0691.1_rc_shift5 (TFAP4_rc)				; local_words_8nt_m30 versus MA0691.1_rc (TFAP4_rc); m=15/17; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.417488; -----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0
MA0048.2_rc_shift5 (NHLH1_rc)				; local_words_8nt_m30 versus MA0048.2_rc (NHLH1_rc); m=16/17; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.41206; -----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0
MA0667.1_shift5 (MYF6)				; local_words_8nt_m30 versus MA0667.1 (MYF6); m=17/17; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.409805; -----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0