One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m36/peak-motifs_local_words_8nt_m36.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m36/peak-motifs_local_words_8nt_m36_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: local_words_8nt_m36_shift3 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
local_words_8nt_m36_shift3 (local_words_8nt_m36local_words_8nt_m36)
; local_words_8nt_m36 (local_words_8nt_m36local_words_8nt_m36); m=0 (reference); ncol1=17; shift=3; ncol=20; ---srGTGACAGCTGgtGgs ; Alignment reference a 0 0 0 315 428 142 149 71 1451 8 1551 28 46 24 4 104 181 117 369 287 c 0 0 0 468 274 226 70 35 31 1560 10 11 1442 16 6 251 98 167 379 465 g 0 0 0 442 550 1109 204 1462 73 13 12 1524 70 15 1569 1061 258 1195 460 469 t 0 0 0 358 331 106 1160 15 28 2 10 20 25 1528 4 167 1046 104 375 362

MA1485.1_rc_shift5 (FERD3L_rc)
; local_words_8nt_m36 versus MA1485.1_rc (FERD3L_rc); m=1/28; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.693823; -----GTrACAGCTGkyrC- ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0832.1_shift5 (Tcf21)
; local_words_8nt_m36 versus MA0832.1 (Tcf21); m=2/28; ncol2=14; w=14; offset=2; strand=D; shift=5; score=0.638947; -----ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA0499.2_rc_shift5 (MYOD1_rc)
; local_words_8nt_m36 versus MA0499.2_rc (MYOD1_rc); m=3/28; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.601831; -----rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA0521.1_shift7 (Tcf12)
; local_words_8nt_m36 versus MA0521.1 (Tcf12); m=4/28; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.578351; -------rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1641.1_shift6 (MYF5)
; local_words_8nt_m36 versus MA1641.1 (MYF5); m=5/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.576804; ------gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA1619.1_rc_shift6 (Ptf1a(var.2)_rc)
; local_words_8nt_m36 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=6/28; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.570973; ------rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1109.1_shift6 (NEUROD1)
; local_words_8nt_m36 versus MA1109.1 (NEUROD1); m=7/28; ncol2=13; w=13; offset=3; strand=D; shift=6; score=0.564926; ------graCAGATGGyrs- ; cor=; Ncor= a 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 0 c 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 0 g 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 0 t 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0 0

MA0500.2_rc_shift6 (MYOG_rc)
; local_words_8nt_m36 versus MA0500.2_rc (MYOG_rc); m=8/28; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.558522; ------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1618.1_shift6 (Ptf1a)
; local_words_8nt_m36 versus MA1618.1 (Ptf1a); m=9/28; ncol2=13; w=13; offset=3; strand=D; shift=6; score=0.548907; ------dmaCAGATGttkh- ; cor=; Ncor= a 0 0 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0

MA1123.2_rc_shift6 (TWIST1_rc)
; local_words_8nt_m36 versus MA1123.2_rc (TWIST1_rc); m=10/28; ncol2=13; w=13; offset=3; strand=R; shift=6; score=0.546518; ------avaCATCTGGwwt- ; cor=; Ncor= a 0 0 0 0 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 0 c 0 0 0 0 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 0 g 0 0 0 0 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 0 t 0 0 0 0 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; local_words_8nt_m36 versus MA1467.1_rc (ATOH1(var.2)_rc); m=11/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.53594; -------RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; local_words_8nt_m36 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.514632; -------rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA0796.1_shift6 (TGIF1)
; local_words_8nt_m36 versus MA0796.1 (TGIF1); m=13/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.511471; ------TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1571.1_shift6 (TGIF2LX)
; local_words_8nt_m36 versus MA1571.1 (TGIF2LX); m=14/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.50773; ------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 c 0 0 0 0 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 g 0 0 0 0 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 t 0 0 0 0 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0

MA0797.1_shift6 (TGIF2)
; local_words_8nt_m36 versus MA0797.1 (TGIF2); m=15/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.501366; ------TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; local_words_8nt_m36 versus MA1572.1_rc (TGIF2LY_rc); m=16/28; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.497544; ------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0

MA0091.1_rc_shift7 (TAL1::TCF3_rc)
; local_words_8nt_m36 versus MA0091.1_rc (TAL1::TCF3_rc); m=17/28; ncol2=12; w=12; offset=4; strand=R; shift=7; score=0.496595; -------AmCAKMTGkTck- ; cor=; Ncor= a 0 0 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 c 0 0 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 g 0 0 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 t 0 0 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0

MA1635.1_shift7 (BHLHE22(var.2))
; local_words_8nt_m36 versus MA1635.1 (BHLHE22(var.2)); m=18/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.489976; -------csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA0665.1_shift7 (MSC)
; local_words_8nt_m36 versus MA0665.1 (MSC); m=19/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.483757; -------AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0816.1_rc_shift7 (Ascl2_rc)
; local_words_8nt_m36 versus MA0816.1_rc (Ascl2_rc); m=20/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.482058; -------rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0691.1_rc_shift7 (TFAP4_rc)
; local_words_8nt_m36 versus MA0691.1_rc (TFAP4_rc); m=21/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.477746; -------AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA1100.2_shift7 (ASCL1)
; local_words_8nt_m36 versus MA1100.2 (ASCL1); m=22/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.468872; -------rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0667.1_rc_shift7 (MYF6_rc)
; local_words_8nt_m36 versus MA0667.1_rc (MYF6_rc); m=23/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.467109; -------RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA0820.1_rc_shift7 (FIGLA_rc)
; local_words_8nt_m36 versus MA0820.1_rc (FIGLA_rc); m=24/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.453245; -------wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0782.2_shift0 (PKNOX1)
; local_words_8nt_m36 versus MA0782.2 (PKNOX1); m=25/28; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.437845; twTGAgTGACAGctr----- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0 0

MA0048.2_rc_shift7 (NHLH1_rc)
; local_words_8nt_m36 versus MA0048.2_rc (NHLH1_rc); m=26/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.417875; -------mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0774.1_shift5 (MEIS2)
; local_words_8nt_m36 versus MA0774.1 (MEIS2); m=27/28; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.414363; -----tTGACAGs------- ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0

MA0775.1_shift5 (MEIS3)
; local_words_8nt_m36 versus MA0775.1 (MEIS3); m=28/28; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.403863; -----wTGACAgs------- ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
local_words_8nt_m36_shift3 (local_words_8nt_m36local_words_8nt_m36)				; local_words_8nt_m36 (local_words_8nt_m36local_words_8nt_m36); m=0 (reference); ncol1=17; shift=3; ncol=20; ---srGTGACAGCTGgtGgs ; Alignment reference a 0 0 0 315 428 142 149 71 1451 8 1551 28 46 24 4 104 181 117 369 287 c 0 0 0 468 274 226 70 35 31 1560 10 11 1442 16 6 251 98 167 379 465 g 0 0 0 442 550 1109 204 1462 73 13 12 1524 70 15 1569 1061 258 1195 460 469 t 0 0 0 358 331 106 1160 15 28 2 10 20 25 1528 4 167 1046 104 375 362
MA1485.1_rc_shift5 (FERD3L_rc)				; local_words_8nt_m36 versus MA1485.1_rc (FERD3L_rc); m=1/28; ncol2=14; w=14; offset=2; strand=R; shift=5; score=0.693823; -----GTrACAGCTGkyrC- ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0
MA0832.1_shift5 (Tcf21)				; local_words_8nt_m36 versus MA0832.1 (Tcf21); m=2/28; ncol2=14; w=14; offset=2; strand=D; shift=5; score=0.638947; -----ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0
MA0499.2_rc_shift5 (MYOD1_rc)				; local_words_8nt_m36 versus MA0499.2_rc (MYOD1_rc); m=3/28; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.601831; -----rkrACAGGTGcwg-- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0
MA0521.1_shift7 (Tcf12)				; local_words_8nt_m36 versus MA0521.1 (Tcf12); m=4/28; ncol2=11; w=11; offset=4; strand=D; shift=7; score=0.578351; -------rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0
MA1641.1_shift6 (MYF5)				; local_words_8nt_m36 versus MA1641.1 (MYF5); m=5/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.576804; ------gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0
MA1619.1_rc_shift6 (Ptf1a(var.2)_rc)				; local_words_8nt_m36 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=6/28; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.570973; ------rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0
MA1109.1_shift6 (NEUROD1)				; local_words_8nt_m36 versus MA1109.1 (NEUROD1); m=7/28; ncol2=13; w=13; offset=3; strand=D; shift=6; score=0.564926; ------graCAGATGGyrs- ; cor=; Ncor= a 0 0 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 0 c 0 0 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 0 g 0 0 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 0 t 0 0 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0 0
MA0500.2_rc_shift6 (MYOG_rc)				; local_words_8nt_m36 versus MA0500.2_rc (MYOG_rc); m=8/28; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.558522; ------sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA1618.1_shift6 (Ptf1a)				; local_words_8nt_m36 versus MA1618.1 (Ptf1a); m=9/28; ncol2=13; w=13; offset=3; strand=D; shift=6; score=0.548907; ------dmaCAGATGttkh- ; cor=; Ncor= a 0 0 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0
MA1123.2_rc_shift6 (TWIST1_rc)				; local_words_8nt_m36 versus MA1123.2_rc (TWIST1_rc); m=10/28; ncol2=13; w=13; offset=3; strand=R; shift=6; score=0.546518; ------avaCATCTGGwwt- ; cor=; Ncor= a 0 0 0 0 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 0 c 0 0 0 0 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 0 g 0 0 0 0 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 0 t 0 0 0 0 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0 0
MA1467.1_rc_shift7 (ATOH1(var.2)_rc)				; local_words_8nt_m36 versus MA1467.1_rc (ATOH1(var.2)_rc); m=11/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.53594; -------RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0
MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)				; local_words_8nt_m36 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.514632; -------rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0
MA0796.1_shift6 (TGIF1)				; local_words_8nt_m36 versus MA0796.1 (TGIF1); m=13/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.511471; ------TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0
MA1571.1_shift6 (TGIF2LX)				; local_words_8nt_m36 versus MA1571.1 (TGIF2LX); m=14/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.50773; ------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 c 0 0 0 0 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 g 0 0 0 0 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 t 0 0 0 0 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0
MA0797.1_shift6 (TGIF2)				; local_words_8nt_m36 versus MA0797.1 (TGIF2); m=15/28; ncol2=12; w=12; offset=3; strand=D; shift=6; score=0.501366; ------TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0
MA1572.1_rc_shift6 (TGIF2LY_rc)				; local_words_8nt_m36 versus MA1572.1_rc (TGIF2LY_rc); m=16/28; ncol2=12; w=12; offset=3; strand=R; shift=6; score=0.497544; ------TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0
MA0091.1_rc_shift7 (TAL1::TCF3_rc)				; local_words_8nt_m36 versus MA0091.1_rc (TAL1::TCF3_rc); m=17/28; ncol2=12; w=12; offset=4; strand=R; shift=7; score=0.496595; -------AmCAKMTGkTck- ; cor=; Ncor= a 0 0 0 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 c 0 0 0 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 g 0 0 0 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 t 0 0 0 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0
MA1635.1_shift7 (BHLHE22(var.2))				; local_words_8nt_m36 versus MA1635.1 (BHLHE22(var.2)); m=18/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.489976; -------csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0
MA0665.1_shift7 (MSC)				; local_words_8nt_m36 versus MA0665.1 (MSC); m=19/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.483757; -------AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0
MA0816.1_rc_shift7 (Ascl2_rc)				; local_words_8nt_m36 versus MA0816.1_rc (Ascl2_rc); m=20/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.482058; -------rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0
MA0691.1_rc_shift7 (TFAP4_rc)				; local_words_8nt_m36 versus MA0691.1_rc (TFAP4_rc); m=21/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.477746; -------AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0
MA1100.2_shift7 (ASCL1)				; local_words_8nt_m36 versus MA1100.2 (ASCL1); m=22/28; ncol2=10; w=10; offset=4; strand=D; shift=7; score=0.468872; -------rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0667.1_rc_shift7 (MYF6_rc)				; local_words_8nt_m36 versus MA0667.1_rc (MYF6_rc); m=23/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.467109; -------RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0
MA0820.1_rc_shift7 (FIGLA_rc)				; local_words_8nt_m36 versus MA0820.1_rc (FIGLA_rc); m=24/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.453245; -------wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0
MA0782.2_shift0 (PKNOX1)				; local_words_8nt_m36 versus MA0782.2 (PKNOX1); m=25/28; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.437845; twTGAgTGACAGctr----- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0 0
MA0048.2_rc_shift7 (NHLH1_rc)				; local_words_8nt_m36 versus MA0048.2_rc (NHLH1_rc); m=26/28; ncol2=10; w=10; offset=4; strand=R; shift=7; score=0.417875; -------mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA0774.1_shift5 (MEIS2)				; local_words_8nt_m36 versus MA0774.1 (MEIS2); m=27/28; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.414363; -----tTGACAGs------- ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0
MA0775.1_shift5 (MEIS3)				; local_words_8nt_m36 versus MA0775.1 (MEIS3); m=28/28; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.403863; -----wTGACAgs------- ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0 0