Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/local_words_8nt_m43/peak-motifs_local_words_8nt_m43.tf
		file1	1	15	1003
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
local_words_8nt_m43 MA0499.2 local_words_8nt_m43local_words_8nt_m43 MYOD1 0.855 0.741 15 13 13 15 0.8667 0.8667 1.0000 D 1
local_words_8nt_m43 MA0832.1 local_words_8nt_m43local_words_8nt_m43 Tcf21 0.794 0.741 15 14 14 15 0.9333 0.9333 1.0000 R 0
local_words_8nt_m43 MA1621.1 local_words_8nt_m43local_words_8nt_m43 Rbpjl 0.783 0.731 15 14 14 15 0.9333 0.9333 1.0000 D 0
local_words_8nt_m43 MA0745.2 local_words_8nt_m43local_words_8nt_m43 SNAI2 0.829 0.718 15 13 13 15 0.8667 0.8667 1.0000 D 1
local_words_8nt_m43 MA0744.2 local_words_8nt_m43local_words_8nt_m43 SCRT2 0.858 0.707 15 16 14 17 0.8235 0.9333 0.8750 R 1
local_words_8nt_m43 MA0743.2 local_words_8nt_m43local_words_8nt_m43 SCRT1 0.852 0.702 15 16 14 17 0.8235 0.9333 0.8750 R 1
local_words_8nt_m43 MA0830.2 local_words_8nt_m43local_words_8nt_m43 TCF4 0.774 0.671 15 13 13 15 0.8667 0.8667 1.0000 D 1
local_words_8nt_m43 MA1631.1 local_words_8nt_m43local_words_8nt_m43 ASCL1(var.2) 0.752 0.651 15 13 13 15 0.8667 0.8667 1.0000 D 1
local_words_8nt_m43 MA1620.1 local_words_8nt_m43local_words_8nt_m43 Ptf1a(var.3) 0.777 0.622 15 12 12 15 0.8000 0.8000 1.0000 D 1
local_words_8nt_m43 MA1618.1 local_words_8nt_m43local_words_8nt_m43 Ptf1a 0.713 0.618 15 13 13 15 0.8667 0.8667 1.0000 R 0
local_words_8nt_m43 MA0521.1 local_words_8nt_m43local_words_8nt_m43 Tcf12 0.841 0.616 15 11 11 15 0.7333 0.7333 1.0000 R 1
local_words_8nt_m43 MA0500.2 local_words_8nt_m43local_words_8nt_m43 MYOG 0.760 0.608 15 12 12 15 0.8000 0.8000 1.0000 D 1
local_words_8nt_m43 MA0091.1 local_words_8nt_m43local_words_8nt_m43 TAL1::TCF3 0.755 0.604 15 12 12 15 0.8000 0.8000 1.0000 D 0
local_words_8nt_m43 MA1641.1 local_words_8nt_m43local_words_8nt_m43 MYF5 0.717 0.573 15 12 12 15 0.8000 0.8000 1.0000 R 1
local_words_8nt_m43 MA1619.1 local_words_8nt_m43local_words_8nt_m43 Ptf1a(var.2) 0.715 0.572 15 12 12 15 0.8000 0.8000 1.0000 D 1
local_words_8nt_m43 MA1559.1 local_words_8nt_m43local_words_8nt_m43 SNAI3 0.857 0.572 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m43 MA0820.1 local_words_8nt_m43local_words_8nt_m43 FIGLA 0.853 0.569 15 10 10 15 0.6667 0.6667 1.0000 D 2
local_words_8nt_m43 MA1105.2 local_words_8nt_m43local_words_8nt_m43 GRHL2 0.706 0.565 15 12 12 15 0.8000 0.8000 1.0000 R 2
local_words_8nt_m43 MA0816.1 local_words_8nt_m43local_words_8nt_m43 Ascl2 0.839 0.560 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m43 MA0665.1 local_words_8nt_m43local_words_8nt_m43 MSC 0.826 0.551 15 10 10 15 0.6667 0.6667 1.0000 D 2
local_words_8nt_m43 MA0667.1 local_words_8nt_m43local_words_8nt_m43 MYF6 0.808 0.538 15 10 10 15 0.6667 0.6667 1.0000 D 2
local_words_8nt_m43 MA1558.1 local_words_8nt_m43local_words_8nt_m43 SNAI1 0.803 0.535 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m43 MA0103.3 local_words_8nt_m43local_words_8nt_m43 ZEB1 0.726 0.532 15 11 11 15 0.7333 0.7333 1.0000 D 2
local_words_8nt_m43 MA0691.1 local_words_8nt_m43local_words_8nt_m43 TFAP4 0.794 0.529 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m43 MA1472.1 local_words_8nt_m43local_words_8nt_m43 BHLHA15(var.2) 0.788 0.525 15 10 10 15 0.6667 0.6667 1.0000 D 2
local_words_8nt_m43 MA1100.2 local_words_8nt_m43local_words_8nt_m43 ASCL1 0.781 0.521 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m43 MA1648.1 local_words_8nt_m43local_words_8nt_m43 TCF12(var.2) 0.708 0.520 15 11 11 15 0.7333 0.7333 1.0000 D 2
local_words_8nt_m43 MA1628.1 local_words_8nt_m43local_words_8nt_m43 Zic1::Zic2 0.707 0.518 15 11 11 15 0.7333 0.7333 1.0000 R 4
local_words_8nt_m43 MA1467.1 local_words_8nt_m43local_words_8nt_m43 ATOH1(var.2) 0.772 0.515 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m43 MA0048.2 local_words_8nt_m43local_words_8nt_m43 NHLH1 0.728 0.486 15 10 10 15 0.6667 0.6667 1.0000 D 2
local_words_8nt_m43 MA1635.1 local_words_8nt_m43local_words_8nt_m43 BHLHE22(var.2) 0.710 0.473 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m43 MA1570.1 local_words_8nt_m43local_words_8nt_m43 TFAP4(var.2) 0.709 0.473 15 10 10 15 0.6667 0.6667 1.0000 R 2
local_words_8nt_m43 MA0819.1 local_words_8nt_m43local_words_8nt_m43 CLOCK 0.708 0.472 15 10 10 15 0.6667 0.6667 1.0000 R 2 
 Host name	pedagogix
 Job started	2020-04-14.165351
 Job done	2020-04-14.165435
 Seconds	6.72
	user	6.72
	system	0.86
	cuser	34.69
;	csystem	1.88