One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m12/peak-motifs_oligos_6nt_mkv4_m12.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m12/peak-motifs_oligos_6nt_mkv4_m12_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m12_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m12_shift0 (oligos_6nt_mkv4_m12oligos_6nt_mkv4_m12)				; oligos_6nt_mkv4_m12 (oligos_6nt_mkv4_m12oligos_6nt_mkv4_m12); m=0 (reference); ncol1=10; shift=0; ncol=10; ssAAGCTChs ; Alignment reference a 721 708 3294 3294 0 0 0 0 973 567 c 1014 1139 0 0 0 3294 0 3294 981 926 g 1001 1045 0 0 3294 0 0 0 339 1195 t 558 402 0 0 0 0 3294 0 1001 606
MA0164.1_shift1 (Nr2e3)				; oligos_6nt_mkv4_m12 versus MA0164.1 (Nr2e3); m=1/1; ncol2=7; w=7; offset=1; strand=D; shift=1; score=0.537778; -cAAGCTT-- ; cor=; Ncor= a 0 4.0 23.0 23.0 0.0 0.0 0.0 0.0 0 0 c 0 12.0 0.0 0.0 1.0 23.0 0.0 0.0 0 0 g 0 2.0 0.0 0.0 22.0 0.0 0.0 0.0 0 0 t 0 5.0 0.0 0.0 0.0 0.0 23.0 23.0 0 0