One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m13/peak-motifs_oligos_6nt_mkv4_m13.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m13/peak-motifs_oligos_6nt_mkv4_m13_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m13_shift1 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv4_m13_shift1 (oligos_6nt_mkv4_m13oligos_6nt_mkv4_m13) |
 |
|
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; oligos_6nt_mkv4_m13 (oligos_6nt_mkv4_m13oligos_6nt_mkv4_m13); m=0 (reference); ncol1=10; shift=1; ncol=12; -ssCGGACGss-
; Alignment reference
a 0 199 276 0 0 0 1640 0 0 217 285 0
c 0 541 511 1640 0 0 0 1640 0 706 525 0
g 0 601 658 0 1640 1620 0 0 1640 510 578 0
t 0 299 195 0 0 20 0 0 0 207 252 0
|
| MA0131.2_rc_shift0 (HINFP_rc) |
 |
|
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; oligos_6nt_mkv4_m13 versus MA0131.2_rc (HINFP_rc); m=1/2; ncol2=12; w=10; offset=-1; strand=R; shift=0; score=0.750675; mcGCGGACGytg
; cor=; Ncor=
a 107.0 97.0 12.0 21.0 3.0 0.0 470.0 10.0 7.0 17.0 53.0 100.0
c 154.0 188.0 15.0 472.0 0.0 13.0 0.0 484.0 97.0 217.0 113.0 106.0
g 84.0 55.0 395.0 31.0 413.0 404.0 0.0 14.0 388.0 45.0 131.0 340.0
t 77.0 85.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 276.0 285.0 23.0
|
| MA0765.2_rc_shift1 (ETV5_rc) |
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; oligos_6nt_mkv4_m13 versus MA0765.2_rc (ETV5_rc); m=2/2; ncol2=11; w=10; offset=0; strand=R; shift=1; score=0.640309; -rsCGGAAGTgv
; cor=; Ncor=
a 0 7222.0 4436.0 4523.0 392.0 255.0 24324.0 23722.0 971.0 1448.0 5100.0 6667.0
c 0 6039.0 11944.0 18757.0 498.0 336.0 816.0 408.0 994.0 3017.0 6129.0 7117.0
g 0 8378.0 6921.0 1743.0 25061.0 25484.0 956.0 1145.0 24041.0 2443.0 10307.0 8003.0
t 0 4679.0 3017.0 1295.0 367.0 243.0 222.0 1043.0 312.0 19410.0 4782.0 4531.0
|