One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m20/peak-motifs_oligos_6nt_mkv4_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m20/peak-motifs_oligos_6nt_mkv4_m20_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m20_shift7 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m20_shift7 (oligos_6nt_mkv4_m20oligos_6nt_mkv4_m20)
; oligos_6nt_mkv4_m20 (oligos_6nt_mkv4_m20oligos_6nt_mkv4_m20); m=0 (reference); ncol1=10; shift=7; ncol=17; -------svAAGCCAsv ; Alignment reference a 0 0 0 0 0 0 0 1652 1772 6813 6813 0 0 0 6813 1156 1915 c 0 0 0 0 0 0 0 1946 1874 0 0 0 6813 6813 0 2126 1947 g 0 0 0 0 0 0 0 2037 2377 0 0 6813 0 0 0 2646 1910 t 0 0 0 0 0 0 0 1178 790 0 0 0 0 0 0 885 1041

MA0671.1_shift8 (NFIX)
; oligos_6nt_mkv4_m20 versus MA0671.1 (NFIX); m=1/8; ncol2=9; w=9; offset=1; strand=D; shift=8; score=0.653921; --------sgtGCCArv ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 c 0 0 0 0 0 0 0 0 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 g 0 0 0 0 0 0 0 0 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 t 0 0 0 0 0 0 0 0 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0

MA0676.1_shift7 (Nr2e1)
; oligos_6nt_mkv4_m20 versus MA0676.1 (Nr2e1); m=2/8; ncol2=9; w=9; offset=0; strand=D; shift=7; score=0.637194; -------aaAAGTCAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 1118.0 1118.0 1118.0 1118.0 40.0 0.0 11.0 1118.0 1118.0 0 c 0 0 0 0 0 0 0 244.0 89.0 1.0 0.0 0.0 58.0 1118.0 0.0 131.0 0 g 0 0 0 0 0 0 0 191.0 448.0 101.0 74.0 1118.0 0.0 12.0 0.0 117.0 0 t 0 0 0 0 0 0 0 401.0 369.0 19.0 5.0 8.0 1118.0 112.0 0.0 247.0 0

MA0092.1_rc_shift9 (Hand1::Tcf3_rc)
; oligos_6nt_mkv4_m20 versus MA0092.1_rc (Hand1::Tcf3_rc); m=3/8; ncol2=10; w=8; offset=2; strand=R; shift=9; score=0.479765; ---------awkCCAGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 16.0 10.0 5.0 1.0 0.0 29.0 1.0 24.0 c 0 0 0 0 0 0 0 0 0 4.0 3.0 1.0 25.0 29.0 0.0 0.0 1.0 g 0 0 0 0 0 0 0 0 0 4.0 0.0 14.0 3.0 0.0 0.0 28.0 2.0 t 0 0 0 0 0 0 0 0 0 5.0 16.0 9.0 0.0 0.0 0.0 0.0 2.0

MA0119.1_shift2 (NFIC::TLX1)
; oligos_6nt_mkv4_m20 versus MA0119.1 (NFIC::TLX1); m=4/8; ncol2=14; w=9; offset=-5; strand=D; shift=2; score=0.451481; --TGGCAssrwGCCAA- ; cor=; Ncor= a 0 0 0.0 0.0 0.0 0.0 14.0 2.0 2.0 7.0 4.0 0.0 0.0 0.0 16.0 14.0 0 c 0 0 0.0 0.0 0.0 16.0 1.0 8.0 8.0 1.0 3.0 0.0 16.0 16.0 0.0 0.0 0 g 0 0 0.0 16.0 16.0 0.0 0.0 5.0 4.0 5.0 2.0 16.0 0.0 0.0 0.0 1.0 0 t 0 0 16.0 0.0 0.0 0.0 1.0 1.0 2.0 3.0 7.0 0.0 0.0 0.0 0.0 1.0 0

MA1597.1_shift2 (ZNF528)
; oligos_6nt_mkv4_m20 versus MA1597.1 (ZNF528); m=5/8; ncol2=17; w=10; offset=-5; strand=D; shift=2; score=0.445117; --cccAGGGAAGcCATT ; cor=; Ncor= a 0 0 84.0 69.0 100.0 524.0 32.0 7.0 22.0 608.0 579.0 5.0 35.0 15.0 606.0 11.0 1.0 c 0 0 380.0 367.0 404.0 12.0 3.0 5.0 2.0 3.0 4.0 1.0 414.0 590.0 2.0 47.0 97.0 g 0 0 66.0 87.0 64.0 61.0 573.0 598.0 590.0 3.0 26.0 608.0 54.0 3.0 7.0 11.0 14.0 t 0 0 86.0 93.0 48.0 19.0 8.0 6.0 2.0 2.0 7.0 2.0 113.0 8.0 1.0 547.0 504.0

MA1527.1_rc_shift0 (NFIC(var.2)_rc)
; oligos_6nt_mkv4_m20 versus MA1527.1_rc (NFIC(var.2)_rc); m=6/8; ncol2=17; w=10; offset=-7; strand=R; shift=0; score=0.437911; syTGGCAcsryGCCAAs ; cor=; Ncor= a 412.0 154.0 0.0 0.0 0.0 0.0 2118.0 379.0 417.0 531.0 461.0 0.0 0.0 0.0 2118.0 2118.0 399.0 c 647.0 1032.0 0.0 0.0 13.0 2118.0 97.0 881.0 678.0 492.0 694.0 0.0 2118.0 2118.0 5.0 65.0 761.0 g 695.0 19.0 0.0 2118.0 2118.0 0.0 340.0 382.0 580.0 705.0 268.0 2118.0 3.0 0.0 0.0 616.0 560.0 t 364.0 1086.0 2118.0 3.0 0.0 0.0 203.0 476.0 443.0 389.0 696.0 100.0 0.0 0.0 0.0 167.0 398.0

MA1528.1_rc_shift0 (NFIX(var.2)_rc)
; oligos_6nt_mkv4_m20 versus MA1528.1_rc (NFIX(var.2)_rc); m=7/8; ncol2=17; w=10; offset=-7; strand=R; shift=0; score=0.434259; syTGGCAcsryGCCAac ; cor=; Ncor= a 3443.0 3322.0 314.0 0.0 0.0 459.0 17346.0 3453.0 3525.0 4455.0 3262.0 175.0 0.0 0.0 17346.0 17346.0 3238.0 c 5740.0 9016.0 63.0 0.0 0.0 17346.0 1423.0 7942.0 5991.0 3846.0 5090.0 0.0 17346.0 17346.0 2386.0 3397.0 6640.0 g 5304.0 2165.0 1856.0 17346.0 17346.0 0.0 2300.0 2529.0 4769.0 5920.0 1890.0 17346.0 0.0 0.0 231.0 3912.0 4287.0 t 2858.0 8330.0 17346.0 0.0 0.0 0.0 1773.0 3423.0 3061.0 3125.0 7104.0 1819.0 0.0 0.0 127.0 4530.0 3182.0

MA0079.4_shift8 (SP1)
; oligos_6nt_mkv4_m20 versus MA0079.4 (SP1); m=8/8; ncol2=15; w=9; offset=1; strand=D; shift=8; score=0.408731; --------ywrRCCACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 c 0 0 0 0 0 0 0 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 g 0 0 0 0 0 0 0 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 t 0 0 0 0 0 0 0 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m20_shift7 (oligos_6nt_mkv4_m20oligos_6nt_mkv4_m20)				; oligos_6nt_mkv4_m20 (oligos_6nt_mkv4_m20oligos_6nt_mkv4_m20); m=0 (reference); ncol1=10; shift=7; ncol=17; -------svAAGCCAsv ; Alignment reference a 0 0 0 0 0 0 0 1652 1772 6813 6813 0 0 0 6813 1156 1915 c 0 0 0 0 0 0 0 1946 1874 0 0 0 6813 6813 0 2126 1947 g 0 0 0 0 0 0 0 2037 2377 0 0 6813 0 0 0 2646 1910 t 0 0 0 0 0 0 0 1178 790 0 0 0 0 0 0 885 1041
MA0671.1_shift8 (NFIX)				; oligos_6nt_mkv4_m20 versus MA0671.1 (NFIX); m=1/8; ncol2=9; w=9; offset=1; strand=D; shift=8; score=0.653921; --------sgtGCCArv ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 c 0 0 0 0 0 0 0 0 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 g 0 0 0 0 0 0 0 0 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 t 0 0 0 0 0 0 0 0 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0
MA0676.1_shift7 (Nr2e1)				; oligos_6nt_mkv4_m20 versus MA0676.1 (Nr2e1); m=2/8; ncol2=9; w=9; offset=0; strand=D; shift=7; score=0.637194; -------aaAAGTCAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 1118.0 1118.0 1118.0 1118.0 40.0 0.0 11.0 1118.0 1118.0 0 c 0 0 0 0 0 0 0 244.0 89.0 1.0 0.0 0.0 58.0 1118.0 0.0 131.0 0 g 0 0 0 0 0 0 0 191.0 448.0 101.0 74.0 1118.0 0.0 12.0 0.0 117.0 0 t 0 0 0 0 0 0 0 401.0 369.0 19.0 5.0 8.0 1118.0 112.0 0.0 247.0 0
MA0092.1_rc_shift9 (Hand1::Tcf3_rc)				; oligos_6nt_mkv4_m20 versus MA0092.1_rc (Hand1::Tcf3_rc); m=3/8; ncol2=10; w=8; offset=2; strand=R; shift=9; score=0.479765; ---------awkCCAGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 16.0 10.0 5.0 1.0 0.0 29.0 1.0 24.0 c 0 0 0 0 0 0 0 0 0 4.0 3.0 1.0 25.0 29.0 0.0 0.0 1.0 g 0 0 0 0 0 0 0 0 0 4.0 0.0 14.0 3.0 0.0 0.0 28.0 2.0 t 0 0 0 0 0 0 0 0 0 5.0 16.0 9.0 0.0 0.0 0.0 0.0 2.0
MA0119.1_shift2 (NFIC::TLX1)				; oligos_6nt_mkv4_m20 versus MA0119.1 (NFIC::TLX1); m=4/8; ncol2=14; w=9; offset=-5; strand=D; shift=2; score=0.451481; --TGGCAssrwGCCAA- ; cor=; Ncor= a 0 0 0.0 0.0 0.0 0.0 14.0 2.0 2.0 7.0 4.0 0.0 0.0 0.0 16.0 14.0 0 c 0 0 0.0 0.0 0.0 16.0 1.0 8.0 8.0 1.0 3.0 0.0 16.0 16.0 0.0 0.0 0 g 0 0 0.0 16.0 16.0 0.0 0.0 5.0 4.0 5.0 2.0 16.0 0.0 0.0 0.0 1.0 0 t 0 0 16.0 0.0 0.0 0.0 1.0 1.0 2.0 3.0 7.0 0.0 0.0 0.0 0.0 1.0 0
MA1597.1_shift2 (ZNF528)				; oligos_6nt_mkv4_m20 versus MA1597.1 (ZNF528); m=5/8; ncol2=17; w=10; offset=-5; strand=D; shift=2; score=0.445117; --cccAGGGAAGcCATT ; cor=; Ncor= a 0 0 84.0 69.0 100.0 524.0 32.0 7.0 22.0 608.0 579.0 5.0 35.0 15.0 606.0 11.0 1.0 c 0 0 380.0 367.0 404.0 12.0 3.0 5.0 2.0 3.0 4.0 1.0 414.0 590.0 2.0 47.0 97.0 g 0 0 66.0 87.0 64.0 61.0 573.0 598.0 590.0 3.0 26.0 608.0 54.0 3.0 7.0 11.0 14.0 t 0 0 86.0 93.0 48.0 19.0 8.0 6.0 2.0 2.0 7.0 2.0 113.0 8.0 1.0 547.0 504.0
MA1527.1_rc_shift0 (NFIC(var.2)_rc)				; oligos_6nt_mkv4_m20 versus MA1527.1_rc (NFIC(var.2)_rc); m=6/8; ncol2=17; w=10; offset=-7; strand=R; shift=0; score=0.437911; syTGGCAcsryGCCAAs ; cor=; Ncor= a 412.0 154.0 0.0 0.0 0.0 0.0 2118.0 379.0 417.0 531.0 461.0 0.0 0.0 0.0 2118.0 2118.0 399.0 c 647.0 1032.0 0.0 0.0 13.0 2118.0 97.0 881.0 678.0 492.0 694.0 0.0 2118.0 2118.0 5.0 65.0 761.0 g 695.0 19.0 0.0 2118.0 2118.0 0.0 340.0 382.0 580.0 705.0 268.0 2118.0 3.0 0.0 0.0 616.0 560.0 t 364.0 1086.0 2118.0 3.0 0.0 0.0 203.0 476.0 443.0 389.0 696.0 100.0 0.0 0.0 0.0 167.0 398.0
MA1528.1_rc_shift0 (NFIX(var.2)_rc)				; oligos_6nt_mkv4_m20 versus MA1528.1_rc (NFIX(var.2)_rc); m=7/8; ncol2=17; w=10; offset=-7; strand=R; shift=0; score=0.434259; syTGGCAcsryGCCAac ; cor=; Ncor= a 3443.0 3322.0 314.0 0.0 0.0 459.0 17346.0 3453.0 3525.0 4455.0 3262.0 175.0 0.0 0.0 17346.0 17346.0 3238.0 c 5740.0 9016.0 63.0 0.0 0.0 17346.0 1423.0 7942.0 5991.0 3846.0 5090.0 0.0 17346.0 17346.0 2386.0 3397.0 6640.0 g 5304.0 2165.0 1856.0 17346.0 17346.0 0.0 2300.0 2529.0 4769.0 5920.0 1890.0 17346.0 0.0 0.0 231.0 3912.0 4287.0 t 2858.0 8330.0 17346.0 0.0 0.0 0.0 1773.0 3423.0 3061.0 3125.0 7104.0 1819.0 0.0 0.0 127.0 4530.0 3182.0
MA0079.4_shift8 (SP1)				; oligos_6nt_mkv4_m20 versus MA0079.4 (SP1); m=8/8; ncol2=15; w=9; offset=1; strand=D; shift=8; score=0.408731; --------ywrRCCACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 c 0 0 0 0 0 0 0 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 g 0 0 0 0 0 0 0 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 t 0 0 0 0 0 0 0 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0