One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m21/peak-motifs_oligos_6nt_mkv4_m21.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m21/peak-motifs_oligos_6nt_mkv4_m21_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m21_shift3 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m21_shift3 (oligos_6nt_mkv4_m21oligos_6nt_mkv4_m21)
; oligos_6nt_mkv4_m21 (oligos_6nt_mkv4_m21oligos_6nt_mkv4_m21); m=0 (reference); ncol1=10; shift=3; ncol=14; ---rcATTCCAgs- ; Alignment reference a 0 0 0 1164 788 3679 0 0 4 0 3673 628 904 0 c 0 0 0 795 1797 0 0 0 3675 3666 0 781 955 0 g 0 0 0 1156 746 0 0 0 0 12 6 1512 980 0 t 0 0 0 564 348 0 3679 3679 0 1 0 758 840 0

MA0809.2_shift1 (TEAD4)
; oligos_6nt_mkv4_m21 versus MA0809.2 (TEAD4); m=1/12; ncol2=12; w=10; offset=-2; strand=D; shift=1; score=0.782317; -ycACATTCCAgs- ; cor=; Ncor= a 0 18932.0 17306.0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 16617.0 19272.0 0 c 0 22343.0 26577.0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 13864.0 20301.0 0 g 0 15111.0 15427.0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 32220.0 22630.0 0 t 0 21700.0 18776.0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 15385.0 15883.0 0

MA0624.1_shift3 (NFATC1)
; oligos_6nt_mkv4_m21 versus MA0624.1 (NFATC1); m=2/12; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.76707; ---wttTTCCryt- ; cor=; Ncor= a 0 0 0 383.0 226.0 158.0 19.0 21.0 14.0 9.0 516.0 230.0 230.0 0 c 0 0 0 134.0 193.0 60.0 35.0 29.0 971.0 967.0 45.0 262.0 227.0 0 g 0 0 0 167.0 189.0 122.0 7.0 15.0 8.0 5.0 357.0 126.0 194.0 0 t 0 0 0 316.0 392.0 660.0 939.0 935.0 7.0 18.0 83.0 383.0 349.0 0

MA0625.1_shift3 (NFATC3)
; oligos_6nt_mkv4_m21 versus MA0625.1 (NFATC3); m=3/12; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.732469; ---wtTTTCCryt- ; cor=; Ncor= a 0 0 0 421.0 179.0 117.0 14.0 3.0 36.0 8.0 552.0 173.0 215.0 0 c 0 0 0 93.0 181.0 40.0 10.0 23.0 933.0 959.0 39.0 251.0 211.0 0 g 0 0 0 139.0 168.0 73.0 5.0 9.0 1.0 23.0 342.0 133.0 173.0 0 t 0 0 0 348.0 472.0 770.0 971.0 966.0 30.0 10.0 67.0 443.0 400.0 0

MA0808.1_shift3 (TEAD3)
; oligos_6nt_mkv4_m21 versus MA0808.1 (TEAD3); m=4/12; ncol2=8; w=8; offset=0; strand=D; shift=3; score=0.726286; ---rCATTCCw--- ; cor=; Ncor= a 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 0 c 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 0 g 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 0 t 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0 0

MA1525.1_rc_shift3 (NFATC4_rc)
; oligos_6nt_mkv4_m21 versus MA1525.1_rc (NFATC4_rc); m=5/12; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.725236; ---wkTTTCCryt- ; cor=; Ncor= a 0 0 0 2239.0 1292.0 259.0 0.0 0.0 0.0 0.0 2816.0 843.0 819.0 0 c 0 0 0 348.0 1789.0 127.0 0.0 0.0 4349.0 4349.0 0.0 2369.0 963.0 0 g 0 0 0 632.0 3276.0 1084.0 0.0 39.0 0.0 0.0 1534.0 329.0 916.0 0 t 0 0 0 1132.0 4349.0 4349.0 4349.0 4349.0 0.0 0.0 95.0 4349.0 1652.0 0

MA0090.3_shift1 (TEAD1)
; oligos_6nt_mkv4_m21 versus MA0090.3 (TEAD1); m=6/12; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.709897; -hyACATTCCAGsm ; cor=; Ncor= a 0 17689.0 16651.0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 13252.0 19194.0 c 0 19272.0 22059.0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 20002.0 21358.0 g 0 14429.0 12053.0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 26525.0 16344.0 t 0 19008.0 19635.0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 10619.0 13502.0

MA1121.1_shift1 (TEAD2)
; oligos_6nt_mkv4_m21 versus MA1121.1 (TEAD2); m=7/12; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.688091; -hcACATTCCwgsc ; cor=; Ncor= a 0 137.0 88.0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 263.0 112.0 111.0 109.0 c 0 145.0 238.0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 60.0 111.0 172.0 221.0 g 0 112.0 81.0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 56.0 207.0 147.0 117.0 t 0 148.0 135.0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 163.0 112.0 112.0 95.0

MA0019.1_rc_shift2 (Ddit3::Cebpa_rc)
; oligos_6nt_mkv4_m21 versus MA0019.1_rc (Ddit3::Cebpa_rc); m=8/12; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.60136; --ggkATTGCAyyy ; cor=; Ncor= a 0 0 7.0 3.0 3.0 33.0 0.0 0.0 2.0 1.0 38.0 3.0 7.0 6.0 c 0 0 6.0 9.0 5.0 0.0 1.0 0.0 0.0 38.0 0.0 15.0 14.0 12.0 g 0 0 26.0 23.0 17.0 6.0 2.0 1.0 33.0 0.0 1.0 3.0 7.0 7.0 t 0 0 0.0 4.0 14.0 0.0 36.0 38.0 4.0 0.0 0.0 18.0 11.0 14.0

MA0152.1_shift4 (NFATC2)
; oligos_6nt_mkv4_m21 versus MA0152.1 (NFATC2); m=9/12; ncol2=7; w=7; offset=1; strand=D; shift=4; score=0.500642; ----TTTTCCA--- ; cor=; Ncor= a 0 0 0 0 3.0 1.0 1.0 0.0 1.0 0.0 18.0 0 0 0 c 0 0 0 0 1.0 2.0 1.0 0.0 25.0 26.0 3.0 0 0 0 g 0 0 0 0 2.0 2.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 20.0 21.0 24.0 26.0 0.0 0.0 4.0 0 0 0

MA0092.1_rc_shift5 (Hand1::Tcf3_rc)
; oligos_6nt_mkv4_m21 versus MA0092.1_rc (Hand1::Tcf3_rc); m=10/12; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.48554; -----awkCCAGAy ; cor=; Ncor= a 0 0 0 0 0 16.0 10.0 5.0 1.0 0.0 29.0 1.0 24.0 4.0 c 0 0 0 0 0 4.0 3.0 1.0 25.0 29.0 0.0 0.0 1.0 15.0 g 0 0 0 0 0 4.0 0.0 14.0 3.0 0.0 0.0 28.0 2.0 0.0 t 0 0 0 0 0 5.0 16.0 9.0 0.0 0.0 0.0 0.0 2.0 10.0

MA0101.1_shift0 (REL)
; oligos_6nt_mkv4_m21 versus MA0101.1 (REL); m=11/12; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=0.458545; sGGrmwTTCC---- ; cor=; Ncor= a 0.0 0.0 1.0 5.0 6.0 5.0 1.0 2.0 0.0 1.0 0 0 0 0 c 5.0 1.0 0.0 1.0 5.0 1.0 0.0 0.0 15.0 16.0 0 0 0 0 g 8.0 15.0 15.0 9.0 3.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 t 4.0 1.0 1.0 2.0 3.0 10.0 16.0 15.0 2.0 0.0 0 0 0 0

MA1624.1_shift5 (Stat5a)
; oligos_6nt_mkv4_m21 versus MA1624.1 (Stat5a); m=12/12; ncol2=12; w=8; offset=2; strand=D; shift=5; score=0.434114; -----wTTCCAAGA ; cor=; Ncor= a 0 0 0 0 0 1328.0 314.0 151.0 66.0 71.0 3191.0 3351.0 19.0 4337.0 c 0 0 0 0 0 851.0 372.0 89.0 4381.0 4046.0 588.0 80.0 22.0 41.0 g 0 0 0 0 0 1004.0 207.0 144.0 26.0 28.0 137.0 980.0 4441.0 49.0 t 0 0 0 0 0 1331.0 3621.0 4130.0 41.0 369.0 598.0 103.0 32.0 87.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m21_shift3 (oligos_6nt_mkv4_m21oligos_6nt_mkv4_m21)				; oligos_6nt_mkv4_m21 (oligos_6nt_mkv4_m21oligos_6nt_mkv4_m21); m=0 (reference); ncol1=10; shift=3; ncol=14; ---rcATTCCAgs- ; Alignment reference a 0 0 0 1164 788 3679 0 0 4 0 3673 628 904 0 c 0 0 0 795 1797 0 0 0 3675 3666 0 781 955 0 g 0 0 0 1156 746 0 0 0 0 12 6 1512 980 0 t 0 0 0 564 348 0 3679 3679 0 1 0 758 840 0
MA0809.2_shift1 (TEAD4)				; oligos_6nt_mkv4_m21 versus MA0809.2 (TEAD4); m=1/12; ncol2=12; w=10; offset=-2; strand=D; shift=1; score=0.782317; -ycACATTCCAgs- ; cor=; Ncor= a 0 18932.0 17306.0 61263.0 7543.0 74797.0 965.0 2673.0 1366.0 1314.0 61802.0 16617.0 19272.0 0 c 0 22343.0 26577.0 2414.0 66205.0 1218.0 1129.0 1176.0 72555.0 75066.0 3874.0 13864.0 20301.0 0 g 0 15111.0 15427.0 11265.0 3295.0 569.0 1025.0 2100.0 1580.0 212.0 1191.0 32220.0 22630.0 0 t 0 21700.0 18776.0 3144.0 1043.0 1502.0 74967.0 72137.0 2585.0 1494.0 11219.0 15385.0 15883.0 0
MA0624.1_shift3 (NFATC1)				; oligos_6nt_mkv4_m21 versus MA0624.1 (NFATC1); m=2/12; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.76707; ---wttTTCCryt- ; cor=; Ncor= a 0 0 0 383.0 226.0 158.0 19.0 21.0 14.0 9.0 516.0 230.0 230.0 0 c 0 0 0 134.0 193.0 60.0 35.0 29.0 971.0 967.0 45.0 262.0 227.0 0 g 0 0 0 167.0 189.0 122.0 7.0 15.0 8.0 5.0 357.0 126.0 194.0 0 t 0 0 0 316.0 392.0 660.0 939.0 935.0 7.0 18.0 83.0 383.0 349.0 0
MA0625.1_shift3 (NFATC3)				; oligos_6nt_mkv4_m21 versus MA0625.1 (NFATC3); m=3/12; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.732469; ---wtTTTCCryt- ; cor=; Ncor= a 0 0 0 421.0 179.0 117.0 14.0 3.0 36.0 8.0 552.0 173.0 215.0 0 c 0 0 0 93.0 181.0 40.0 10.0 23.0 933.0 959.0 39.0 251.0 211.0 0 g 0 0 0 139.0 168.0 73.0 5.0 9.0 1.0 23.0 342.0 133.0 173.0 0 t 0 0 0 348.0 472.0 770.0 971.0 966.0 30.0 10.0 67.0 443.0 400.0 0
MA0808.1_shift3 (TEAD3)				; oligos_6nt_mkv4_m21 versus MA0808.1 (TEAD3); m=4/12; ncol2=8; w=8; offset=0; strand=D; shift=3; score=0.726286; ---rCATTCCw--- ; cor=; Ncor= a 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 0 c 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 0 g 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 0 t 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0 0
MA1525.1_rc_shift3 (NFATC4_rc)				; oligos_6nt_mkv4_m21 versus MA1525.1_rc (NFATC4_rc); m=5/12; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.725236; ---wkTTTCCryt- ; cor=; Ncor= a 0 0 0 2239.0 1292.0 259.0 0.0 0.0 0.0 0.0 2816.0 843.0 819.0 0 c 0 0 0 348.0 1789.0 127.0 0.0 0.0 4349.0 4349.0 0.0 2369.0 963.0 0 g 0 0 0 632.0 3276.0 1084.0 0.0 39.0 0.0 0.0 1534.0 329.0 916.0 0 t 0 0 0 1132.0 4349.0 4349.0 4349.0 4349.0 0.0 0.0 95.0 4349.0 1652.0 0
MA0090.3_shift1 (TEAD1)				; oligos_6nt_mkv4_m21 versus MA0090.3 (TEAD1); m=6/12; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.709897; -hyACATTCCAGsm ; cor=; Ncor= a 0 17689.0 16651.0 58030.0 6096.0 68106.0 535.0 4976.0 1348.0 702.0 57190.0 9124.0 13252.0 19194.0 c 0 19272.0 22059.0 1248.0 61276.0 646.0 700.0 622.0 66953.0 67635.0 1729.0 6215.0 20002.0 21358.0 g 0 14429.0 12053.0 9179.0 1923.0 946.0 646.0 1210.0 765.0 374.0 2051.0 47856.0 26525.0 16344.0 t 0 19008.0 19635.0 1941.0 1103.0 700.0 68517.0 63590.0 1332.0 1687.0 9428.0 7203.0 10619.0 13502.0
MA1121.1_shift1 (TEAD2)				; oligos_6nt_mkv4_m21 versus MA1121.1 (TEAD2); m=7/12; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.688091; -hcACATTCCwgsc ; cor=; Ncor= a 0 137.0 88.0 441.0 39.0 517.0 2.0 15.0 8.0 8.0 263.0 112.0 111.0 109.0 c 0 145.0 238.0 17.0 478.0 5.0 10.0 8.0 500.0 513.0 60.0 111.0 172.0 221.0 g 0 112.0 81.0 70.0 14.0 11.0 6.0 9.0 10.0 3.0 56.0 207.0 147.0 117.0 t 0 148.0 135.0 14.0 11.0 9.0 524.0 510.0 24.0 18.0 163.0 112.0 112.0 95.0
MA0019.1_rc_shift2 (Ddit3::Cebpa_rc)				; oligos_6nt_mkv4_m21 versus MA0019.1_rc (Ddit3::Cebpa_rc); m=8/12; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.60136; --ggkATTGCAyyy ; cor=; Ncor= a 0 0 7.0 3.0 3.0 33.0 0.0 0.0 2.0 1.0 38.0 3.0 7.0 6.0 c 0 0 6.0 9.0 5.0 0.0 1.0 0.0 0.0 38.0 0.0 15.0 14.0 12.0 g 0 0 26.0 23.0 17.0 6.0 2.0 1.0 33.0 0.0 1.0 3.0 7.0 7.0 t 0 0 0.0 4.0 14.0 0.0 36.0 38.0 4.0 0.0 0.0 18.0 11.0 14.0
MA0152.1_shift4 (NFATC2)				; oligos_6nt_mkv4_m21 versus MA0152.1 (NFATC2); m=9/12; ncol2=7; w=7; offset=1; strand=D; shift=4; score=0.500642; ----TTTTCCA--- ; cor=; Ncor= a 0 0 0 0 3.0 1.0 1.0 0.0 1.0 0.0 18.0 0 0 0 c 0 0 0 0 1.0 2.0 1.0 0.0 25.0 26.0 3.0 0 0 0 g 0 0 0 0 2.0 2.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 20.0 21.0 24.0 26.0 0.0 0.0 4.0 0 0 0
MA0092.1_rc_shift5 (Hand1::Tcf3_rc)				; oligos_6nt_mkv4_m21 versus MA0092.1_rc (Hand1::Tcf3_rc); m=10/12; ncol2=10; w=8; offset=2; strand=R; shift=5; score=0.48554; -----awkCCAGAy ; cor=; Ncor= a 0 0 0 0 0 16.0 10.0 5.0 1.0 0.0 29.0 1.0 24.0 4.0 c 0 0 0 0 0 4.0 3.0 1.0 25.0 29.0 0.0 0.0 1.0 15.0 g 0 0 0 0 0 4.0 0.0 14.0 3.0 0.0 0.0 28.0 2.0 0.0 t 0 0 0 0 0 5.0 16.0 9.0 0.0 0.0 0.0 0.0 2.0 10.0
MA0101.1_shift0 (REL)				; oligos_6nt_mkv4_m21 versus MA0101.1 (REL); m=11/12; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=0.458545; sGGrmwTTCC---- ; cor=; Ncor= a 0.0 0.0 1.0 5.0 6.0 5.0 1.0 2.0 0.0 1.0 0 0 0 0 c 5.0 1.0 0.0 1.0 5.0 1.0 0.0 0.0 15.0 16.0 0 0 0 0 g 8.0 15.0 15.0 9.0 3.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 t 4.0 1.0 1.0 2.0 3.0 10.0 16.0 15.0 2.0 0.0 0 0 0 0
MA1624.1_shift5 (Stat5a)				; oligos_6nt_mkv4_m21 versus MA1624.1 (Stat5a); m=12/12; ncol2=12; w=8; offset=2; strand=D; shift=5; score=0.434114; -----wTTCCAAGA ; cor=; Ncor= a 0 0 0 0 0 1328.0 314.0 151.0 66.0 71.0 3191.0 3351.0 19.0 4337.0 c 0 0 0 0 0 851.0 372.0 89.0 4381.0 4046.0 588.0 80.0 22.0 41.0 g 0 0 0 0 0 1004.0 207.0 144.0 26.0 28.0 137.0 980.0 4441.0 49.0 t 0 0 0 0 0 1331.0 3621.0 4130.0 41.0 369.0 598.0 103.0 32.0 87.0