One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m24/peak-motifs_oligos_6nt_mkv4_m24.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m24/peak-motifs_oligos_6nt_mkv4_m24_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m24_shift0 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m24_shift0 (oligos_6nt_mkv4_m24oligos_6nt_mkv4_m24)
; oligos_6nt_mkv4_m24 (oligos_6nt_mkv4_m24oligos_6nt_mkv4_m24); m=0 (reference); ncol1=11; shift=0; ncol=11; scTGCCCAGss ; Alignment reference a 602 538 0 1 0 0 0 3730 0 693 897 c 1109 1770 0 0 3730 3730 3724 0 0 1483 1075 g 1145 925 0 3729 0 0 6 0 3730 986 938 t 874 497 3730 0 0 0 0 0 0 568 820

MA0161.2_rc_shift0 (NFIC_rc)
; oligos_6nt_mkv4_m24 versus MA0161.2_rc (NFIC_rc); m=1/5; ncol2=11; w=11; offset=0; strand=R; shift=0; score=0.790307; tsTGCCAAGwa ; cor=; Ncor= a 2791.0 2844.0 574.0 530.0 290.0 81.0 10745.0 10781.0 324.0 3488.0 3867.0 c 2760.0 3186.0 478.0 88.0 10973.0 11087.0 177.0 369.0 329.0 2086.0 2478.0 g 2712.0 2951.0 397.0 10725.0 121.0 129.0 333.0 303.0 10542.0 2137.0 2647.0 t 3344.0 2626.0 10158.0 264.0 223.0 310.0 352.0 154.0 412.0 3896.0 2615.0

MA0738.1_shift1 (HIC2)
; oligos_6nt_mkv4_m24 versus MA0738.1 (HIC2); m=2/5; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.678576; -rTGCCMrsy- ; cor=; Ncor= a 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0 c 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0 g 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0 t 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0

MA1116.1_rc_shift0 (RBPJ_rc)
; oligos_6nt_mkv4_m24 versus MA1116.1_rc (RBPJ_rc); m=3/5; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.662542; ckTTCCCAsv- ; cor=; Ncor= a 547.0 413.0 4.0 29.0 78.0 60.0 1.0 2386.0 254.0 611.0 0 c 711.0 592.0 1.0 4.0 2309.0 2313.0 2341.0 2.0 787.0 604.0 0 g 579.0 655.0 15.0 0.0 8.0 20.0 25.0 12.0 872.0 842.0 0 t 565.0 742.0 2382.0 2369.0 7.0 9.0 35.0 2.0 489.0 345.0 0

MA0670.1_shift0 (NFIA)
; oligos_6nt_mkv4_m24 versus MA0670.1 (NFIA); m=4/5; ncol2=10; w=10; offset=0; strand=D; shift=0; score=0.646839; ggTGCCAArw- ; cor=; Ncor= a 22969.0 20706.0 0.0 0.0 0.0 0.0 89071.0 89418.0 23752.0 27709.0 0 c 22347.0 14274.0 0.0 0.0 93597.0 93394.0 0.0 0.0 21852.0 14439.0 0 g 24321.0 35089.0 0.0 98253.0 0.0 0.0 0.0 0.0 29423.0 16505.0 0 t 22282.0 23019.0 95496.0 0.0 0.0 0.0 0.0 0.0 17410.0 32052.0 0

MA0597.1_shift1 (THAP1)
; oligos_6nt_mkv4_m24 versus MA0597.1 (THAP1); m=5/5; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.596798; -ytGCCMkya- ; cor=; Ncor= a 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m24_shift0 (oligos_6nt_mkv4_m24oligos_6nt_mkv4_m24)				; oligos_6nt_mkv4_m24 (oligos_6nt_mkv4_m24oligos_6nt_mkv4_m24); m=0 (reference); ncol1=11; shift=0; ncol=11; scTGCCCAGss ; Alignment reference a 602 538 0 1 0 0 0 3730 0 693 897 c 1109 1770 0 0 3730 3730 3724 0 0 1483 1075 g 1145 925 0 3729 0 0 6 0 3730 986 938 t 874 497 3730 0 0 0 0 0 0 568 820
MA0161.2_rc_shift0 (NFIC_rc)				; oligos_6nt_mkv4_m24 versus MA0161.2_rc (NFIC_rc); m=1/5; ncol2=11; w=11; offset=0; strand=R; shift=0; score=0.790307; tsTGCCAAGwa ; cor=; Ncor= a 2791.0 2844.0 574.0 530.0 290.0 81.0 10745.0 10781.0 324.0 3488.0 3867.0 c 2760.0 3186.0 478.0 88.0 10973.0 11087.0 177.0 369.0 329.0 2086.0 2478.0 g 2712.0 2951.0 397.0 10725.0 121.0 129.0 333.0 303.0 10542.0 2137.0 2647.0 t 3344.0 2626.0 10158.0 264.0 223.0 310.0 352.0 154.0 412.0 3896.0 2615.0
MA0738.1_shift1 (HIC2)				; oligos_6nt_mkv4_m24 versus MA0738.1 (HIC2); m=2/5; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.678576; -rTGCCMrsy- ; cor=; Ncor= a 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0 c 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0 g 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0 t 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0
MA1116.1_rc_shift0 (RBPJ_rc)				; oligos_6nt_mkv4_m24 versus MA1116.1_rc (RBPJ_rc); m=3/5; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.662542; ckTTCCCAsv- ; cor=; Ncor= a 547.0 413.0 4.0 29.0 78.0 60.0 1.0 2386.0 254.0 611.0 0 c 711.0 592.0 1.0 4.0 2309.0 2313.0 2341.0 2.0 787.0 604.0 0 g 579.0 655.0 15.0 0.0 8.0 20.0 25.0 12.0 872.0 842.0 0 t 565.0 742.0 2382.0 2369.0 7.0 9.0 35.0 2.0 489.0 345.0 0
MA0670.1_shift0 (NFIA)				; oligos_6nt_mkv4_m24 versus MA0670.1 (NFIA); m=4/5; ncol2=10; w=10; offset=0; strand=D; shift=0; score=0.646839; ggTGCCAArw- ; cor=; Ncor= a 22969.0 20706.0 0.0 0.0 0.0 0.0 89071.0 89418.0 23752.0 27709.0 0 c 22347.0 14274.0 0.0 0.0 93597.0 93394.0 0.0 0.0 21852.0 14439.0 0 g 24321.0 35089.0 0.0 98253.0 0.0 0.0 0.0 0.0 29423.0 16505.0 0 t 22282.0 23019.0 95496.0 0.0 0.0 0.0 0.0 0.0 17410.0 32052.0 0
MA0597.1_shift1 (THAP1)				; oligos_6nt_mkv4_m24 versus MA0597.1 (THAP1); m=5/5; ncol2=9; w=9; offset=1; strand=D; shift=1; score=0.596798; -ytGCCMkya- ; cor=; Ncor= a 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0