Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m29/peak-motifs_oligos_6nt_mkv4_m29.tf
		file1	1	11	3731
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv4_m29 MA1634.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 BATF 0.963 0.963 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m29 MA0462.2 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 BATF::JUN 0.963 0.963 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m29 MA0835.2 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 BATF3 0.957 0.957 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m29 MA0476.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOS 0.912 0.912 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m29 MA1130.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOSL2::JUN 0.947 0.869 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_6nt_mkv4_m29 MA0841.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 NFE2 0.866 0.866 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m29 MA0099.3 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOS::JUN 0.941 0.856 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m29 MA1134.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOS::JUNB 0.928 0.851 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_6nt_mkv4_m29 MA1135.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOSB::JUNB 0.929 0.845 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_6nt_mkv4_m29 MA1144.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOSL2::JUND 0.929 0.845 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_6nt_mkv4_m29 MA1138.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOSL2::JUNB 0.925 0.841 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_6nt_mkv4_m29 MA1142.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOSL1::JUND 0.922 0.838 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_6nt_mkv4_m29 MA1132.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 JUN::JUNB 0.913 0.830 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_6nt_mkv4_m29 MA1141.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOS::JUND 0.953 0.806 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_6nt_mkv4_m29 MA1128.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOSL1::JUN 0.949 0.803 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_6nt_mkv4_m29 MA0477.2 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOSL1 0.945 0.800 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_6nt_mkv4_m29 MA0478.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOSL2 0.947 0.789 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_6nt_mkv4_m29 MA1137.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 FOSL1::JUNB 0.931 0.788 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_6nt_mkv4_m29 MA0490.2 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 JUNB 0.919 0.778 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_6nt_mkv4_m29 MA0491.2 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 JUND 0.919 0.777 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_6nt_mkv4_m29 MA1633.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 BACH1 0.919 0.777 11 13 11 13 0.8462 1.0000 0.8462 R -2
oligos_6nt_mkv4_m29 MA1622.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 Smad2::Smad3 0.969 0.761 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_6nt_mkv4_m29 MA0655.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 JDP2 0.887 0.726 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_6nt_mkv4_m29 MA0496.3 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 MAFK 0.904 0.663 11 15 11 15 0.7333 1.0000 0.7333 R -3
oligos_6nt_mkv4_m29 MA0591.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 Bach1::Mafk 0.872 0.640 11 15 11 15 0.7333 1.0000 0.7333 R -2
oligos_6nt_mkv4_m29 MA0489.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 JUN(var.2) 0.934 0.623 11 14 10 15 0.6667 0.9091 0.7143 R 1
oligos_6nt_mkv4_m29 MA0150.2 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 Nfe2l2 0.846 0.620 11 15 11 15 0.7333 1.0000 0.7333 R -1
oligos_6nt_mkv4_m29 MA0089.2 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 NFE2L1 0.874 0.601 11 16 11 16 0.6875 1.0000 0.6875 R -3
oligos_6nt_mkv4_m29 MA0501.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 MAF::NFE2 0.870 0.544 11 15 10 16 0.6250 0.9091 0.6667 R -5
oligos_6nt_mkv4_m29 MA1521.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 MAFA 0.708 0.519 11 15 11 15 0.7333 1.0000 0.7333 D -2
oligos_6nt_mkv4_m29 MA1520.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 MAF 0.705 0.517 11 15 11 15 0.7333 1.0000 0.7333 D -2
oligos_6nt_mkv4_m29 MA1101.2 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 BACH2 0.841 0.487 11 19 11 19 0.5789 1.0000 0.5789 R -4
oligos_6nt_mkv4_m29 MA0067.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 Pax2 0.814 0.475 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_6nt_mkv4_m29 MA1114.1 oligos_6nt_mkv4_m29oligos_6nt_mkv4_m29 PBX3 0.705 0.456 11 17 11 17 0.6471 1.0000 0.6471 D -1 
 Host name	pedagogix
 Job started	2020-04-14.152041
 Job done	2020-04-14.152145
 Seconds	8.02
	user	8.02
	system	1.13
	cuser	43.58
;	csystem	3