| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv4_m32_shift9 (oligos_6nt_mkv4_m32oligos_6nt_mkv4_m32) |
 |
  |
  |
; oligos_6nt_mkv4_m32 (oligos_6nt_mkv4_m32oligos_6nt_mkv4_m32); m=0 (reference); ncol1=12; shift=9; ncol=21; ---------rrATGCCAAGvv
; Alignment reference
a 0 0 0 0 0 0 0 0 0 525 515 1862 7 91 48 25 1796 1609 186 481 497
c 0 0 0 0 0 0 0 0 0 434 461 1 62 72 1755 1757 16 120 238 479 518
g 0 0 0 0 0 0 0 0 0 537 517 21 5 1640 51 33 51 89 1364 501 518
t 0 0 0 0 0 0 0 0 0 393 396 5 1815 86 35 74 26 71 101 428 356
|
| MA0161.2_rc_shift10 (NFIC_rc) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA0161.2_rc (NFIC_rc); m=1/11; ncol2=11; w=11; offset=1; strand=R; shift=10; score=0.828703; ----------tsTGCCAAGwa
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0 0 2791.0 2844.0 574.0 530.0 290.0 81.0 10745.0 10781.0 324.0 3488.0 3867.0
c 0 0 0 0 0 0 0 0 0 0 2760.0 3186.0 478.0 88.0 10973.0 11087.0 177.0 369.0 329.0 2086.0 2478.0
g 0 0 0 0 0 0 0 0 0 0 2712.0 2951.0 397.0 10725.0 121.0 129.0 333.0 303.0 10542.0 2137.0 2647.0
t 0 0 0 0 0 0 0 0 0 0 3344.0 2626.0 10158.0 264.0 223.0 310.0 352.0 154.0 412.0 3896.0 2615.0
|
| MA0670.1_shift10 (NFIA) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA0670.1 (NFIA); m=2/11; ncol2=10; w=10; offset=1; strand=D; shift=10; score=0.730604; ----------ggTGCCAArw-
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0 0 22969.0 20706.0 0.0 0.0 0.0 0.0 89071.0 89418.0 23752.0 27709.0 0
c 0 0 0 0 0 0 0 0 0 0 22347.0 14274.0 0.0 0.0 93597.0 93394.0 0.0 0.0 21852.0 14439.0 0
g 0 0 0 0 0 0 0 0 0 0 24321.0 35089.0 0.0 98253.0 0.0 0.0 0.0 0.0 29423.0 16505.0 0
t 0 0 0 0 0 0 0 0 0 0 22282.0 23019.0 95496.0 0.0 0.0 0.0 0.0 0.0 17410.0 32052.0 0
|
| MA1115.1_shift9 (POU5F1) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA1115.1 (POU5F1); m=3/11; ncol2=11; w=11; offset=0; strand=D; shift=9; score=0.670462; ---------wwATGCAAAtd-
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0
c 0 0 0 0 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0
g 0 0 0 0 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0
t 0 0 0 0 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0
|
| MA0739.1_shift11 (Hic1) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA0739.1 (Hic1); m=4/11; ncol2=9; w=9; offset=2; strand=D; shift=11; score=0.631886; -----------rTGCCAaCc-
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0 0 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0
c 0 0 0 0 0 0 0 0 0 0 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0
g 0 0 0 0 0 0 0 0 0 0 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0
t 0 0 0 0 0 0 0 0 0 0 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0
|
| MA0671.1_shift10 (NFIX) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA0671.1 (NFIX); m=5/11; ncol2=9; w=9; offset=1; strand=D; shift=10; score=0.630379; ----------sgtGCCArv--
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0 0 7951.0 7832.0 11279.0 132.0 3.0 0.0 32864.0 32864.0 8251.0 0 0
c 0 0 0 0 0 0 0 0 0 0 8810.0 6134.0 9695.0 186.0 32864.0 32864.0 2230.0 1356.0 9039.0 0 0
g 0 0 0 0 0 0 0 0 0 0 8725.0 10855.0 5911.0 32864.0 3257.0 0.0 180.0 12688.0 9135.0 0 0
t 0 0 0 0 0 0 0 0 0 0 7378.0 8043.0 32864.0 2539.0 29.0 0.0 110.0 2399.0 6439.0 0 0
|
| MA0738.1_shift11 (HIC2) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA0738.1 (HIC2); m=6/11; ncol2=9; w=9; offset=2; strand=D; shift=11; score=0.576001; -----------rTGCCMrsy-
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0
c 0 0 0 0 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0
g 0 0 0 0 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0
t 0 0 0 0 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0
|
| MA0808.1_shift9 (TEAD3) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA0808.1 (TEAD3); m=7/11; ncol2=8; w=8; offset=0; strand=D; shift=9; score=0.48039; ---------rCATTCCw----
; cor=; Ncor=
a 0 0 0 0 0 0 0 0 0 12530.0 2524.0 21444.0 0.0 4566.0 0.0 0.0 21444.0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 66.0 18920.0 0.0 0.0 23.0 21444.0 21444.0 1039.0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 8913.0 441.0 0.0 0.0 969.0 0.0 0.0 8654.0 0 0 0 0
t 0 0 0 0 0 0 0 0 0 1109.0 0.0 0.0 21444.0 16878.0 0.0 4.0 13663.0 0 0 0 0
|
| MA1643.1_shift0 (NFIB) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA1643.1 (NFIB); m=8/11; ncol2=21; w=12; offset=-9; strand=D; shift=0; score=0.469887; trcCTGGCAykgTGCCAagha
; cor=; Ncor=
a 1055.0 1181.0 424.0 273.0 133.0 5.0 16.0 148.0 3178.0 443.0 1087.0 594.0 701.0 14.0 16.0 8.0 3937.0 2989.0 552.0 1156.0 1367.0
c 946.0 839.0 2911.0 3142.0 20.0 11.0 12.0 4223.0 519.0 1190.0 792.0 532.0 181.0 31.0 4357.0 4382.0 373.0 161.0 467.0 1193.0 1015.0
g 1023.0 1298.0 526.0 193.0 162.0 4389.0 4372.0 27.0 175.0 608.0 1149.0 2822.0 451.0 4191.0 23.0 11.0 36.0 1055.0 2969.0 874.0 984.0
t 1392.0 1098.0 555.0 808.0 4101.0 11.0 16.0 18.0 544.0 2175.0 1388.0 468.0 3083.0 180.0 20.0 15.0 70.0 211.0 428.0 1193.0 1050.0
|
| MA0119.1_shift4 (NFIC::TLX1) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA0119.1 (NFIC::TLX1); m=9/11; ncol2=14; w=9; offset=-5; strand=D; shift=4; score=0.461027; ----TGGCAssrwGCCAA---
; cor=; Ncor=
a 0 0 0 0 0.0 0.0 0.0 0.0 14.0 2.0 2.0 7.0 4.0 0.0 0.0 0.0 16.0 14.0 0 0 0
c 0 0 0 0 0.0 0.0 0.0 16.0 1.0 8.0 8.0 1.0 3.0 0.0 16.0 16.0 0.0 0.0 0 0 0
g 0 0 0 0 0.0 16.0 16.0 0.0 0.0 5.0 4.0 5.0 2.0 16.0 0.0 0.0 0.0 1.0 0 0 0
t 0 0 0 0 16.0 0.0 0.0 0.0 1.0 1.0 2.0 3.0 7.0 0.0 0.0 0.0 0.0 1.0 0 0 0
|
| MA1527.1_shift2 (NFIC(var.2)) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA1527.1 (NFIC(var.2)); m=10/11; ncol2=17; w=10; offset=-7; strand=D; shift=2; score=0.434489; --sTTGGCrysgTGCCArs--
; cor=; Ncor=
a 0 0 398.0 167.0 0.0 0.0 0.0 100.0 696.0 389.0 443.0 476.0 203.0 0.0 0.0 3.0 2118.0 1086.0 364.0 0 0
c 0 0 560.0 616.0 0.0 0.0 3.0 2118.0 268.0 705.0 580.0 382.0 340.0 0.0 2118.0 2118.0 0.0 19.0 695.0 0 0
g 0 0 761.0 65.0 5.0 2118.0 2118.0 0.0 694.0 492.0 678.0 881.0 97.0 2118.0 13.0 0.0 0.0 1032.0 647.0 0 0
t 0 0 399.0 2118.0 2118.0 0.0 0.0 0.0 461.0 531.0 417.0 379.0 2118.0 0.0 0.0 0.0 0.0 154.0 412.0 0 0
|
| MA1528.1_shift2 (NFIX(var.2)) |
 |
|
|
; oligos_6nt_mkv4_m32 versus MA1528.1 (NFIX(var.2)); m=11/11; ncol2=17; w=10; offset=-7; strand=D; shift=2; score=0.424962; --gtTGGCrysgTGCCArs--
; cor=; Ncor=
a 0 0 3182.0 4530.0 127.0 0.0 0.0 1819.0 7104.0 3125.0 3061.0 3423.0 1773.0 0.0 0.0 0.0 17346.0 8330.0 2858.0 0 0
c 0 0 4287.0 3912.0 231.0 0.0 0.0 17346.0 1890.0 5920.0 4769.0 2529.0 2300.0 0.0 17346.0 17346.0 1856.0 2165.0 5304.0 0 0
g 0 0 6640.0 3397.0 2386.0 17346.0 17346.0 0.0 5090.0 3846.0 5991.0 7942.0 1423.0 17346.0 0.0 0.0 63.0 9016.0 5740.0 0 0
t 0 0 3238.0 17346.0 17346.0 0.0 0.0 175.0 3262.0 4455.0 3525.0 3453.0 17346.0 459.0 0.0 0.0 314.0 3322.0 3443.0 0 0
|