One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m32/peak-motifs_oligos_6nt_mkv4_m32.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m32/peak-motifs_oligos_6nt_mkv4_m32_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m32_shift9 ; 12 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv4_m32_shift9 (oligos_6nt_mkv4_m32oligos_6nt_mkv4_m32)    
; oligos_6nt_mkv4_m32 (oligos_6nt_mkv4_m32oligos_6nt_mkv4_m32); m=0 (reference); ncol1=12; shift=9; ncol=21; ---------rrATGCCAAGvv
; Alignment reference
a	0	0	0	0	0	0	0	0	0	525	515	1862	7	91	48	25	1796	1609	186	481	497
c	0	0	0	0	0	0	0	0	0	434	461	1	62	72	1755	1757	16	120	238	479	518
g	0	0	0	0	0	0	0	0	0	537	517	21	5	1640	51	33	51	89	1364	501	518
t	0	0	0	0	0	0	0	0	0	393	396	5	1815	86	35	74	26	71	101	428	356
MA0161.2_rc_shift10 (NFIC_rc)
; oligos_6nt_mkv4_m32 versus MA0161.2_rc (NFIC_rc); m=1/11; ncol2=11; w=11; offset=1; strand=R; shift=10; score=0.828703; ----------tsTGCCAAGwa
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	2791.0	2844.0	574.0	530.0	290.0	81.0	10745.0	10781.0	324.0	3488.0	3867.0
c	0	0	0	0	0	0	0	0	0	0	2760.0	3186.0	478.0	88.0	10973.0	11087.0	177.0	369.0	329.0	2086.0	2478.0
g	0	0	0	0	0	0	0	0	0	0	2712.0	2951.0	397.0	10725.0	121.0	129.0	333.0	303.0	10542.0	2137.0	2647.0
t	0	0	0	0	0	0	0	0	0	0	3344.0	2626.0	10158.0	264.0	223.0	310.0	352.0	154.0	412.0	3896.0	2615.0
MA0670.1_shift10 (NFIA)
; oligos_6nt_mkv4_m32 versus MA0670.1 (NFIA); m=2/11; ncol2=10; w=10; offset=1; strand=D; shift=10; score=0.730604; ----------ggTGCCAArw-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	22969.0	20706.0	0.0	0.0	0.0	0.0	89071.0	89418.0	23752.0	27709.0	0
c	0	0	0	0	0	0	0	0	0	0	22347.0	14274.0	0.0	0.0	93597.0	93394.0	0.0	0.0	21852.0	14439.0	0
g	0	0	0	0	0	0	0	0	0	0	24321.0	35089.0	0.0	98253.0	0.0	0.0	0.0	0.0	29423.0	16505.0	0
t	0	0	0	0	0	0	0	0	0	0	22282.0	23019.0	95496.0	0.0	0.0	0.0	0.0	0.0	17410.0	32052.0	0
MA1115.1_shift9 (POU5F1)
; oligos_6nt_mkv4_m32 versus MA1115.1 (POU5F1); m=3/11; ncol2=11; w=11; offset=0; strand=D; shift=9; score=0.670462; ---------wwATGCAAAtd-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	4982.0	3603.0	12693.0	83.0	717.0	533.0	11756.0	10560.0	12280.0	2556.0	3476.0	0
c	0	0	0	0	0	0	0	0	0	1290.0	2785.0	122.0	130.0	192.0	10310.0	132.0	690.0	270.0	2104.0	2450.0	0
g	0	0	0	0	0	0	0	0	0	1996.0	1908.0	229.0	67.0	11571.0	548.0	118.0	1026.0	257.0	2071.0	3551.0	0
t	0	0	0	0	0	0	0	0	0	4846.0	4818.0	70.0	12834.0	634.0	1723.0	1108.0	838.0	307.0	6383.0	3637.0	0
MA0739.1_shift11 (Hic1)
; oligos_6nt_mkv4_m32 versus MA0739.1 (Hic1); m=4/11; ncol2=9; w=9; offset=2; strand=D; shift=11; score=0.631886; -----------rTGCCAaCc-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0	6337.0	62.0	950.0	50.0	88.0	9008.0	6140.0	1220.0	1610.0	0
c	0	0	0	0	0	0	0	0	0	0	0	719.0	422.0	588.0	11007.0	11007.0	1999.0	1986.0	11007.0	4822.0	0
g	0	0	0	0	0	0	0	0	0	0	0	4670.0	73.0	11007.0	121.0	31.0	3.0	2267.0	1629.0	1884.0	0
t	0	0	0	0	0	0	0	0	0	0	0	666.0	11007.0	183.0	0.0	68.0	317.0	614.0	1488.0	2692.0	0
MA0671.1_shift10 (NFIX)
; oligos_6nt_mkv4_m32 versus MA0671.1 (NFIX); m=5/11; ncol2=9; w=9; offset=1; strand=D; shift=10; score=0.630379; ----------sgtGCCArv--
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	7951.0	7832.0	11279.0	132.0	3.0	0.0	32864.0	32864.0	8251.0	0	0
c	0	0	0	0	0	0	0	0	0	0	8810.0	6134.0	9695.0	186.0	32864.0	32864.0	2230.0	1356.0	9039.0	0	0
g	0	0	0	0	0	0	0	0	0	0	8725.0	10855.0	5911.0	32864.0	3257.0	0.0	180.0	12688.0	9135.0	0	0
t	0	0	0	0	0	0	0	0	0	0	7378.0	8043.0	32864.0	2539.0	29.0	0.0	110.0	2399.0	6439.0	0	0
MA0738.1_shift11 (HIC2)
; oligos_6nt_mkv4_m32 versus MA0738.1 (HIC2); m=6/11; ncol2=9; w=9; offset=2; strand=D; shift=11; score=0.576001; -----------rTGCCMrsy-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0	2606.0	0.0	494.0	23.0	435.0	1466.0	2493.0	770.0	760.0	0
c	0	0	0	0	0	0	0	0	0	0	0	394.0	117.0	354.0	4891.0	4891.0	3425.0	710.0	2200.0	1732.0	0
g	0	0	0	0	0	0	0	0	0	0	0	2285.0	0.0	4891.0	14.0	0.0	0.0	1290.0	1237.0	1001.0	0
t	0	0	0	0	0	0	0	0	0	0	0	367.0	4891.0	151.0	0.0	59.0	0.0	399.0	684.0	1398.0	0
MA0808.1_shift9 (TEAD3)
; oligos_6nt_mkv4_m32 versus MA0808.1 (TEAD3); m=7/11; ncol2=8; w=8; offset=0; strand=D; shift=9; score=0.48039; ---------rCATTCCw----
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	12530.0	2524.0	21444.0	0.0	4566.0	0.0	0.0	21444.0	0	0	0	0
c	0	0	0	0	0	0	0	0	0	66.0	18920.0	0.0	0.0	23.0	21444.0	21444.0	1039.0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	8913.0	441.0	0.0	0.0	969.0	0.0	0.0	8654.0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	1109.0	0.0	0.0	21444.0	16878.0	0.0	4.0	13663.0	0	0	0	0
MA1643.1_shift0 (NFIB)
; oligos_6nt_mkv4_m32 versus MA1643.1 (NFIB); m=8/11; ncol2=21; w=12; offset=-9; strand=D; shift=0; score=0.469887; trcCTGGCAykgTGCCAagha
; cor=; Ncor=
a	1055.0	1181.0	424.0	273.0	133.0	5.0	16.0	148.0	3178.0	443.0	1087.0	594.0	701.0	14.0	16.0	8.0	3937.0	2989.0	552.0	1156.0	1367.0
c	946.0	839.0	2911.0	3142.0	20.0	11.0	12.0	4223.0	519.0	1190.0	792.0	532.0	181.0	31.0	4357.0	4382.0	373.0	161.0	467.0	1193.0	1015.0
g	1023.0	1298.0	526.0	193.0	162.0	4389.0	4372.0	27.0	175.0	608.0	1149.0	2822.0	451.0	4191.0	23.0	11.0	36.0	1055.0	2969.0	874.0	984.0
t	1392.0	1098.0	555.0	808.0	4101.0	11.0	16.0	18.0	544.0	2175.0	1388.0	468.0	3083.0	180.0	20.0	15.0	70.0	211.0	428.0	1193.0	1050.0
MA0119.1_shift4 (NFIC::TLX1)
; oligos_6nt_mkv4_m32 versus MA0119.1 (NFIC::TLX1); m=9/11; ncol2=14; w=9; offset=-5; strand=D; shift=4; score=0.461027; ----TGGCAssrwGCCAA---
; cor=; Ncor=
a	0	0	0	0	0.0	0.0	0.0	0.0	14.0	2.0	2.0	7.0	4.0	0.0	0.0	0.0	16.0	14.0	0	0	0
c	0	0	0	0	0.0	0.0	0.0	16.0	1.0	8.0	8.0	1.0	3.0	0.0	16.0	16.0	0.0	0.0	0	0	0
g	0	0	0	0	0.0	16.0	16.0	0.0	0.0	5.0	4.0	5.0	2.0	16.0	0.0	0.0	0.0	1.0	0	0	0
t	0	0	0	0	16.0	0.0	0.0	0.0	1.0	1.0	2.0	3.0	7.0	0.0	0.0	0.0	0.0	1.0	0	0	0
MA1527.1_shift2 (NFIC(var.2))
; oligos_6nt_mkv4_m32 versus MA1527.1 (NFIC(var.2)); m=10/11; ncol2=17; w=10; offset=-7; strand=D; shift=2; score=0.434489; --sTTGGCrysgTGCCArs--
; cor=; Ncor=
a	0	0	398.0	167.0	0.0	0.0	0.0	100.0	696.0	389.0	443.0	476.0	203.0	0.0	0.0	3.0	2118.0	1086.0	364.0	0	0
c	0	0	560.0	616.0	0.0	0.0	3.0	2118.0	268.0	705.0	580.0	382.0	340.0	0.0	2118.0	2118.0	0.0	19.0	695.0	0	0
g	0	0	761.0	65.0	5.0	2118.0	2118.0	0.0	694.0	492.0	678.0	881.0	97.0	2118.0	13.0	0.0	0.0	1032.0	647.0	0	0
t	0	0	399.0	2118.0	2118.0	0.0	0.0	0.0	461.0	531.0	417.0	379.0	2118.0	0.0	0.0	0.0	0.0	154.0	412.0	0	0
MA1528.1_shift2 (NFIX(var.2))
; oligos_6nt_mkv4_m32 versus MA1528.1 (NFIX(var.2)); m=11/11; ncol2=17; w=10; offset=-7; strand=D; shift=2; score=0.424962; --gtTGGCrysgTGCCArs--
; cor=; Ncor=
a	0	0	3182.0	4530.0	127.0	0.0	0.0	1819.0	7104.0	3125.0	3061.0	3423.0	1773.0	0.0	0.0	0.0	17346.0	8330.0	2858.0	0	0
c	0	0	4287.0	3912.0	231.0	0.0	0.0	17346.0	1890.0	5920.0	4769.0	2529.0	2300.0	0.0	17346.0	17346.0	1856.0	2165.0	5304.0	0	0
g	0	0	6640.0	3397.0	2386.0	17346.0	17346.0	0.0	5090.0	3846.0	5991.0	7942.0	1423.0	17346.0	0.0	0.0	63.0	9016.0	5740.0	0	0
t	0	0	3238.0	17346.0	17346.0	0.0	0.0	175.0	3262.0	4455.0	3525.0	3453.0	17346.0	459.0	0.0	0.0	314.0	3322.0	3443.0	0	0