Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m34/peak-motifs_oligos_6nt_mkv4_m34.tf
		file1	1	12	1739
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv4_m34 MA1111.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR2F2 0.953 0.874 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_6nt_mkv4_m34 MA0017.2 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR2F1 0.864 0.797 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_6nt_mkv4_m34 MA0141.3 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 ESRRB 0.862 0.790 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_6nt_mkv4_m34 MA0643.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 Esrrg 0.914 0.761 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_6nt_mkv4_m34 MA1112.2 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR4A1 0.897 0.759 12 12 11 13 0.8462 0.9167 0.9167 D -1
oligos_6nt_mkv4_m34 MA0592.3 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 ESRRA 0.906 0.712 12 13 11 14 0.7857 0.9167 0.8462 D -2
oligos_6nt_mkv4_m34 MA1540.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR5A1 0.875 0.673 12 11 10 13 0.7692 0.8333 0.9091 D -1
oligos_6nt_mkv4_m34 MA1535.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR2C1 0.842 0.631 12 9 9 12 0.7500 0.7500 1.0000 D 1
oligos_6nt_mkv4_m34 MA0071.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RORA 0.909 0.629 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_6nt_mkv4_m34 MA0160.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR4A2 0.902 0.601 12 8 8 12 0.6667 0.6667 1.0000 D 2
oligos_6nt_mkv4_m34 MA0505.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 Nr5a2 0.862 0.592 12 15 11 16 0.6875 0.9167 0.7333 D -4
oligos_6nt_mkv4_m34 MA1536.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR2C2(var.2) 0.840 0.560 12 8 8 12 0.6667 0.6667 1.0000 D 2
oligos_6nt_mkv4_m34 MA1150.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RORB 0.726 0.558 12 11 10 13 0.7692 0.8333 0.9091 D -1
oligos_6nt_mkv4_m34 MA1541.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR6A1 0.760 0.537 12 17 12 17 0.7059 1.0000 0.7059 D -1
oligos_6nt_mkv4_m34 MA0729.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RARA 0.789 0.526 12 18 12 18 0.6667 1.0000 0.6667 D -6
oligos_6nt_mkv4_m34 MA0857.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 Rarb 0.762 0.493 12 16 11 17 0.6471 0.9167 0.6875 D 1
oligos_6nt_mkv4_m34 MA1537.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR2F1(var.2) 0.834 0.491 12 15 10 17 0.5882 0.8333 0.6667 D -5
oligos_6nt_mkv4_m34 MA1539.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR2F6(var.3) 0.831 0.489 12 15 10 17 0.5882 0.8333 0.6667 R 2
oligos_6nt_mkv4_m34 MA0115.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR1H2::RXRA 0.800 0.489 12 17 11 18 0.6111 0.9167 0.6471 D -6
oligos_6nt_mkv4_m34 MA1538.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 NR2F1(var.3) 0.828 0.487 12 15 10 17 0.5882 0.8333 0.6667 R 2
oligos_6nt_mkv4_m34 MA1494.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 HNF4A(var.2) 0.824 0.484 12 15 10 17 0.5882 0.8333 0.6667 D -5
oligos_6nt_mkv4_m34 MA1574.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 THRB 0.810 0.476 12 15 10 17 0.5882 0.8333 0.6667 D -5
oligos_6nt_mkv4_m34 MA0860.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 Rarg(var.2) 0.905 0.476 12 17 10 19 0.5263 0.8333 0.5882 D 2
oligos_6nt_mkv4_m34 MA1552.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RARB(var.3) 0.755 0.472 12 14 10 16 0.6250 0.8333 0.7143 R 2
oligos_6nt_mkv4_m34 MA0258.2 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 ESR2 0.939 0.470 12 15 9 18 0.5000 0.7500 0.6000 D 3
oligos_6nt_mkv4_m34 MA1550.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 PPARD 0.840 0.467 12 16 10 18 0.5556 0.8333 0.6250 D -6
oligos_6nt_mkv4_m34 MA1553.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RARG(var.3) 0.747 0.467 12 14 10 16 0.6250 0.8333 0.7143 R 2
oligos_6nt_mkv4_m34 MA0855.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RXRB 0.877 0.464 12 14 9 17 0.5294 0.7500 0.6429 D -5
oligos_6nt_mkv4_m34 MA0512.2 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 Rxra 0.877 0.464 12 14 9 17 0.5294 0.7500 0.6429 D -5
oligos_6nt_mkv4_m34 MA0677.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 Nr2f6 0.875 0.463 12 14 9 17 0.5294 0.7500 0.6429 D -5
oligos_6nt_mkv4_m34 MA0856.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RXRG 0.872 0.462 12 14 9 17 0.5294 0.7500 0.6429 D -5
oligos_6nt_mkv4_m34 MA0072.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RORA(var.2) 0.732 0.457 12 14 10 16 0.6250 0.8333 0.7143 D -4
oligos_6nt_mkv4_m34 MA0112.3 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 ESR1 0.861 0.453 12 17 10 19 0.5263 0.8333 0.5882 D 2
oligos_6nt_mkv4_m34 MA1556.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RXRG(var.2) 0.723 0.452 12 14 10 16 0.6250 0.8333 0.7143 D 2
oligos_6nt_mkv4_m34 MA1576.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 THRB(var.3) 0.819 0.450 12 19 11 20 0.5500 0.9167 0.5789 R 1
oligos_6nt_mkv4_m34 MA0859.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 Rarg 0.805 0.447 12 16 10 18 0.5556 0.8333 0.6250 D -6
oligos_6nt_mkv4_m34 MA1151.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RORC 0.731 0.438 12 12 9 15 0.6000 0.7500 0.7500 D -3
oligos_6nt_mkv4_m34 MA0728.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 Nr2f6(var.2) 0.719 0.423 12 15 10 17 0.5882 0.8333 0.6667 D 2
oligos_6nt_mkv4_m34 MA0730.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RARA(var.2) 0.940 0.423 12 17 9 20 0.4500 0.7500 0.5294 D -8
oligos_6nt_mkv4_m34 MA0858.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 Rarb(var.2) 0.930 0.419 12 17 9 20 0.4500 0.7500 0.5294 D -8
oligos_6nt_mkv4_m34 MA1148.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 PPARA::RXRA 0.837 0.418 12 18 10 20 0.5000 0.8333 0.5556 D -8
oligos_6nt_mkv4_m34 MA1149.1 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 RARA::RXRG 0.834 0.417 12 18 10 20 0.5000 0.8333 0.5556 D 2
oligos_6nt_mkv4_m34 MA0065.2 oligos_6nt_mkv4_m34oligos_6nt_mkv4_m34 Pparg::Rxra 0.800 0.400 12 15 9 18 0.5000 0.7500 0.6000 D -6 
 Host name	pedagogix
 Job started	2020-04-14.152231
 Job done	2020-04-14.152325
 Seconds	6.11
	user	6.11
	system	0.96
	cuser	37.75
;	csystem	3.01