One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m35/peak-motifs_oligos_6nt_mkv4_m35.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m35/peak-motifs_oligos_6nt_mkv4_m35_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m35_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m35_shift0 (oligos_6nt_mkv4_m35oligos_6nt_mkv4_m35)
; oligos_6nt_mkv4_m35 (oligos_6nt_mkv4_m35oligos_6nt_mkv4_m35); m=0 (reference); ncol1=10; shift=0; ncol=16; bsTCTCCAss------ ; Alignment reference a 966 853 0 1 0 0 0 5844 838 1268 0 0 0 0 0 0 c 1830 2162 0 5843 0 5844 5844 0 1631 2106 0 0 0 0 0 0 g 1477 1479 0 0 0 0 0 0 2469 1479 0 0 0 0 0 0 t 1571 1350 5844 0 5844 0 0 0 906 991 0 0 0 0 0 0

MA0152.1_shift1 (NFATC2)
; oligos_6nt_mkv4_m35 versus MA0152.1 (NFATC2); m=1/3; ncol2=7; w=7; offset=1; strand=D; shift=1; score=0.50097; -TTTTCCA-------- ; cor=; Ncor= a 0 3.0 1.0 1.0 0.0 1.0 0.0 18.0 0 0 0 0 0 0 0 0 c 0 1.0 2.0 1.0 0.0 25.0 26.0 3.0 0 0 0 0 0 0 0 0 g 0 2.0 2.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 t 0 20.0 21.0 24.0 26.0 0.0 0.0 4.0 0 0 0 0 0 0 0 0

MA0130.1_shift3 (ZNF354C)
; oligos_6nt_mkv4_m35 versus MA0130.1 (ZNF354C); m=2/3; ncol2=6; w=6; offset=3; strand=D; shift=3; score=0.484899; ---mTCCAC------- ; cor=; Ncor= a 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 c 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 g 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0

MA1579.1_shift1 (ZBTB26)
; oligos_6nt_mkv4_m35 versus MA1579.1 (ZBTB26); m=3/3; ncol2=15; w=9; offset=1; strand=D; shift=1; score=0.417898; -tdcTCCAGAAaarmy ; cor=; Ncor= a 0 399.0 449.0 274.0 9.0 20.0 5.0 1535.0 27.0 1582.0 1134.0 669.0 583.0 432.0 425.0 381.0 c 0 386.0 342.0 872.0 5.0 1592.0 1503.0 17.0 3.0 22.0 138.0 327.0 378.0 379.0 409.0 449.0 g 0 402.0 412.0 123.0 5.0 12.0 13.0 49.0 1581.0 9.0 223.0 322.0 338.0 483.0 392.0 327.0 t 0 440.0 424.0 358.0 1608.0 3.0 106.0 26.0 16.0 14.0 132.0 309.0 328.0 333.0 401.0 470.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m35_shift0 (oligos_6nt_mkv4_m35oligos_6nt_mkv4_m35)				; oligos_6nt_mkv4_m35 (oligos_6nt_mkv4_m35oligos_6nt_mkv4_m35); m=0 (reference); ncol1=10; shift=0; ncol=16; bsTCTCCAss------ ; Alignment reference a 966 853 0 1 0 0 0 5844 838 1268 0 0 0 0 0 0 c 1830 2162 0 5843 0 5844 5844 0 1631 2106 0 0 0 0 0 0 g 1477 1479 0 0 0 0 0 0 2469 1479 0 0 0 0 0 0 t 1571 1350 5844 0 5844 0 0 0 906 991 0 0 0 0 0 0
MA0152.1_shift1 (NFATC2)				; oligos_6nt_mkv4_m35 versus MA0152.1 (NFATC2); m=1/3; ncol2=7; w=7; offset=1; strand=D; shift=1; score=0.50097; -TTTTCCA-------- ; cor=; Ncor= a 0 3.0 1.0 1.0 0.0 1.0 0.0 18.0 0 0 0 0 0 0 0 0 c 0 1.0 2.0 1.0 0.0 25.0 26.0 3.0 0 0 0 0 0 0 0 0 g 0 2.0 2.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 0 t 0 20.0 21.0 24.0 26.0 0.0 0.0 4.0 0 0 0 0 0 0 0 0
MA0130.1_shift3 (ZNF354C)				; oligos_6nt_mkv4_m35 versus MA0130.1 (ZNF354C); m=2/3; ncol2=6; w=6; offset=3; strand=D; shift=3; score=0.484899; ---mTCCAC------- ; cor=; Ncor= a 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 c 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 g 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0
MA1579.1_shift1 (ZBTB26)				; oligos_6nt_mkv4_m35 versus MA1579.1 (ZBTB26); m=3/3; ncol2=15; w=9; offset=1; strand=D; shift=1; score=0.417898; -tdcTCCAGAAaarmy ; cor=; Ncor= a 0 399.0 449.0 274.0 9.0 20.0 5.0 1535.0 27.0 1582.0 1134.0 669.0 583.0 432.0 425.0 381.0 c 0 386.0 342.0 872.0 5.0 1592.0 1503.0 17.0 3.0 22.0 138.0 327.0 378.0 379.0 409.0 449.0 g 0 402.0 412.0 123.0 5.0 12.0 13.0 49.0 1581.0 9.0 223.0 322.0 338.0 483.0 392.0 327.0 t 0 440.0 424.0 358.0 1608.0 3.0 106.0 26.0 16.0 14.0 132.0 309.0 328.0 333.0 401.0 470.0