One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m38/peak-motifs_oligos_6nt_mkv4_m38.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m38/peak-motifs_oligos_6nt_mkv4_m38_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m38_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv4_m38_shift0 (oligos_6nt_mkv4_m38oligos_6nt_mkv4_m38) |
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; oligos_6nt_mkv4_m38 (oligos_6nt_mkv4_m38oligos_6nt_mkv4_m38); m=0 (reference); ncol1=10; shift=0; ncol=14; ssCGGCTCcs----
; Alignment reference
a 685 516 0 0 0 0 0 0 706 586 0 0 0 0
c 1779 1558 4541 0 0 4541 0 4541 1935 1435 0 0 0 0
g 1272 1735 0 4541 4541 0 0 0 940 1832 0 0 0 0
t 805 732 0 0 0 0 4541 0 960 688 0 0 0 0
|
| MA1581.1_rc_shift1 (ZBTB6_rc) |
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|
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; oligos_6nt_mkv4_m38 versus MA1581.1_rc (ZBTB6_rc); m=1/1; ncol2=13; w=9; offset=1; strand=R; shift=1; score=0.482186; -skGGCTCAAGsrh
; cor=; Ncor=
a 0 344.0 464.0 223.0 46.0 14.0 21.0 7.0 1566.0 2042.0 28.0 165.0 725.0 604.0
c 0 749.0 467.0 88.0 38.0 2135.0 20.0 2148.0 409.0 52.0 25.0 593.0 481.0 713.0
g 0 593.0 707.0 1814.0 2087.0 20.0 28.0 59.0 45.0 104.0 2080.0 1157.0 623.0 317.0
t 0 541.0 589.0 102.0 56.0 58.0 2158.0 13.0 207.0 29.0 94.0 312.0 398.0 593.0
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