One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m40/peak-motifs_oligos_6nt_mkv4_m40.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m40/peak-motifs_oligos_6nt_mkv4_m40_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m40_shift2 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m40_shift2 (oligos_6nt_mkv4_m40oligos_6nt_mkv4_m40)
; oligos_6nt_mkv4_m40 (oligos_6nt_mkv4_m40oligos_6nt_mkv4_m40); m=0 (reference); ncol1=13; shift=2; ncol=15; --ccCCACCCCACcc ; Alignment reference a 0 0 570 433 154 111 2464 64 116 117 53 2775 92 674 429 c 0 0 1277 1477 2720 2847 173 2833 2837 2828 2904 60 2772 1397 1515 g 0 0 639 583 86 41 233 71 70 85 52 191 89 556 570 t 0 0 590 583 116 77 206 108 53 46 67 50 123 449 562

MA0753.2_shift0 (ZNF740)
; oligos_6nt_mkv4_m40 versus MA0753.2 (ZNF740); m=1/10; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.602683; cyrCCCCCCCCAc-- ; cor=; Ncor= a 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 c 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 g 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 t 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0

MA0595.1_shift3 (SREBF1)
; oligos_6nt_mkv4_m40 versus MA0595.1 (SREBF1); m=2/10; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.567114; ---rTCACcCCAy-- ; cor=; Ncor= a 0 0 0 28.0 0.0 0.0 58.0 0.0 6.0 0.0 2.0 58.0 0.0 0 0 c 0 0 0 14.0 0.0 58.0 0.0 51.0 38.0 44.0 45.0 0.0 26.0 0 0 g 0 0 0 16.0 0.0 0.0 0.0 7.0 13.0 0.0 11.0 0.0 7.0 0 0 t 0 0 0 0.0 58.0 0.0 0.0 0.0 1.0 14.0 0.0 0.0 25.0 0 0

MA1578.1_shift5 (VEZF1)
; oligos_6nt_mkv4_m40 versus MA1578.1 (VEZF1); m=3/10; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.559748; -----CCCCCCmytw ; cor=; Ncor= a 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 c 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 g 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0

MA0039.4_shift5 (KLF4)
; oligos_6nt_mkv4_m40 versus MA0039.4 (KLF4); m=4/10; ncol2=12; w=10; offset=3; strand=D; shift=5; score=0.553551; -----ssCCCCACCC ; cor=; Ncor= a 0 0 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 c 0 0 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 g 0 0 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 t 0 0 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0

MA0599.1_shift1 (KLF5)
; oligos_6nt_mkv4_m40 versus MA0599.1 (KLF5); m=5/10; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=0.54113; -gCCMCrCCCh---- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0

MA1513.1_shift1 (KLF15)
; oligos_6nt_mkv4_m40 versus MA1513.1 (KLF15); m=6/10; ncol2=11; w=10; offset=-1; strand=D; shift=1; score=0.500149; -scCCCGCCCcs--- ; cor=; Ncor= a 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0

MA1515.1_shift0 (KLF2)
; oligos_6nt_mkv4_m40 versus MA1515.1 (KLF2); m=7/10; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.437025; srCCmCrCCCw---- ; cor=; Ncor= a 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 c 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 g 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 t 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0

MA0493.1_shift0 (Klf1)
; oligos_6nt_mkv4_m40 versus MA0493.1 (Klf1); m=8/10; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.428514; rrCCACACCCw---- ; cor=; Ncor= a 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 c 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 g 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 t 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0

MA1522.1_shift0 (MAZ)
; oligos_6nt_mkv4_m40 versus MA1522.1 (MAZ); m=9/10; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.427142; ssCCCCTCCcc---- ; cor=; Ncor= a 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 c 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 g 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 t 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0

MA0130.1_shift2 (ZNF354C)
; oligos_6nt_mkv4_m40 versus MA0130.1 (ZNF354C); m=10/10; ncol2=6; w=6; offset=0; strand=D; shift=2; score=0.418842; --mTCCAC------- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m40_shift2 (oligos_6nt_mkv4_m40oligos_6nt_mkv4_m40)				; oligos_6nt_mkv4_m40 (oligos_6nt_mkv4_m40oligos_6nt_mkv4_m40); m=0 (reference); ncol1=13; shift=2; ncol=15; --ccCCACCCCACcc ; Alignment reference a 0 0 570 433 154 111 2464 64 116 117 53 2775 92 674 429 c 0 0 1277 1477 2720 2847 173 2833 2837 2828 2904 60 2772 1397 1515 g 0 0 639 583 86 41 233 71 70 85 52 191 89 556 570 t 0 0 590 583 116 77 206 108 53 46 67 50 123 449 562
MA0753.2_shift0 (ZNF740)				; oligos_6nt_mkv4_m40 versus MA0753.2 (ZNF740); m=1/10; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.602683; cyrCCCCCCCCAc-- ; cor=; Ncor= a 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 0 c 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 0 g 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 0 t 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0 0
MA0595.1_shift3 (SREBF1)				; oligos_6nt_mkv4_m40 versus MA0595.1 (SREBF1); m=2/10; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.567114; ---rTCACcCCAy-- ; cor=; Ncor= a 0 0 0 28.0 0.0 0.0 58.0 0.0 6.0 0.0 2.0 58.0 0.0 0 0 c 0 0 0 14.0 0.0 58.0 0.0 51.0 38.0 44.0 45.0 0.0 26.0 0 0 g 0 0 0 16.0 0.0 0.0 0.0 7.0 13.0 0.0 11.0 0.0 7.0 0 0 t 0 0 0 0.0 58.0 0.0 0.0 0.0 1.0 14.0 0.0 0.0 25.0 0 0
MA1578.1_shift5 (VEZF1)				; oligos_6nt_mkv4_m40 versus MA1578.1 (VEZF1); m=3/10; ncol2=10; w=10; offset=3; strand=D; shift=5; score=0.559748; -----CCCCCCmytw ; cor=; Ncor= a 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 c 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 g 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0
MA0039.4_shift5 (KLF4)				; oligos_6nt_mkv4_m40 versus MA0039.4 (KLF4); m=4/10; ncol2=12; w=10; offset=3; strand=D; shift=5; score=0.553551; -----ssCCCCACCC ; cor=; Ncor= a 0 0 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 c 0 0 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 g 0 0 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 t 0 0 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0
MA0599.1_shift1 (KLF5)				; oligos_6nt_mkv4_m40 versus MA0599.1 (KLF5); m=5/10; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=0.54113; -gCCMCrCCCh---- ; cor=; Ncor= a 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0
MA1513.1_shift1 (KLF15)				; oligos_6nt_mkv4_m40 versus MA1513.1 (KLF15); m=6/10; ncol2=11; w=10; offset=-1; strand=D; shift=1; score=0.500149; -scCCCGCCCcs--- ; cor=; Ncor= a 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0
MA1515.1_shift0 (KLF2)				; oligos_6nt_mkv4_m40 versus MA1515.1 (KLF2); m=7/10; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.437025; srCCmCrCCCw---- ; cor=; Ncor= a 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 c 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 g 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 t 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0
MA0493.1_shift0 (Klf1)				; oligos_6nt_mkv4_m40 versus MA0493.1 (Klf1); m=8/10; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.428514; rrCCACACCCw---- ; cor=; Ncor= a 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 0 c 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 0 g 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 0 t 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0 0
MA1522.1_shift0 (MAZ)				; oligos_6nt_mkv4_m40 versus MA1522.1 (MAZ); m=9/10; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.427142; ssCCCCTCCcc---- ; cor=; Ncor= a 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 0 c 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 0 g 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 0 t 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0 0
MA0130.1_shift2 (ZNF354C)				; oligos_6nt_mkv4_m40 versus MA0130.1 (ZNF354C); m=10/10; ncol2=6; w=6; offset=0; strand=D; shift=2; score=0.418842; --mTCCAC------- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 0