Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43.tf
		file1	1	11	2438
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv4_m43 MA0136.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ELF5 0.882 0.882 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m43 MA0759.1 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ELK3 0.923 0.839 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m43 MA0028.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ELK1 0.918 0.834 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m43 MA1484.1 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ETS2 0.909 0.826 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv4_m43 MA0156.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 FEV 0.902 0.820 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m43 MA0750.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ZBTB7A 0.968 0.819 11 13 11 13 0.8462 1.0000 0.8462 D 0
oligos_6nt_mkv4_m43 MA1483.1 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ELF2 0.891 0.817 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_6nt_mkv4_m43 MA0641.1 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ELF4 0.885 0.811 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_6nt_mkv4_m43 MA0645.1 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ETV6 0.888 0.807 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m43 MA0763.1 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ETV3 0.886 0.805 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m43 MA0474.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ERG 0.886 0.805 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m43 MA0098.3 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ETS1 0.885 0.804 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m43 MA0076.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ELK4 0.964 0.803 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_6nt_mkv4_m43 MA0475.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 FLI1 0.881 0.801 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m43 MA0760.1 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ERF 0.876 0.797 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m43 MA0765.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ETV5 0.936 0.780 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_6nt_mkv4_m43 MA0762.1 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ETV2 0.775 0.775 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m43 MA0686.1 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 SPDEF 0.731 0.731 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m43 MA0764.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ETV4 0.773 0.702 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv4_m43 MA0761.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ETV1 0.761 0.598 11 14 11 14 0.7857 1.0000 0.7857 D -1
oligos_6nt_mkv4_m43 MA0473.3 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ELF1 0.760 0.597 11 14 11 14 0.7857 1.0000 0.7857 D -1
oligos_6nt_mkv4_m43 MA0062.3 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 GABPA 0.747 0.587 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_6nt_mkv4_m43 MA0640.2 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 ELF3 0.738 0.580 11 14 11 14 0.7857 1.0000 0.7857 R 0
oligos_6nt_mkv4_m43 MA0598.3 oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43 EHF 0.740 0.542 11 15 11 15 0.7333 1.0000 0.7333 R -2 
 Host name	pedagogix
 Job started	2020-04-14.152530
 Job done	2020-04-14.152604
 Seconds	5.78
	user	5.78
	system	0.62
	cuser	26.7
;	csystem	1.55