One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m43/peak-motifs_oligos_6nt_mkv4_m43_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m43_shift2 ; 25 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv4_m43_shift2 (oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43)    
; oligos_6nt_mkv4_m43 (oligos_6nt_mkv4_m43oligos_6nt_mkv4_m43); m=0 (reference); ncol1=11; shift=2; ncol=15; --ssCCGGAAGyg--
; Alignment reference
a	0	0	542	484	161	0	0	1	2429	2307	37	305	436	0	0
c	0	0	732	762	1826	2428	10	0	0	128	79	931	556	0	0
g	0	0	706	780	369	10	2428	2421	0	0	2297	551	1063	0	0
t	0	0	458	412	82	0	0	16	9	3	25	651	383	0	0
MA0136.2_shift2 (ELF5)
; oligos_6nt_mkv4_m43 versus MA0136.2 (ELF5); m=1/24; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.881607; --acsmGGAAGtr--
; cor=; Ncor=
a	0	0	2416.0	1221.0	987.0	1458.0	3.0	5.0	2699.0	2646.0	890.0	477.0	959.0	0	0
c	0	0	252.0	2298.0	2453.0	2528.0	0.0	0.0	11.0	61.0	155.0	716.0	371.0	0	0
g	0	0	301.0	955.0	1266.0	309.0	3307.0	3315.0	1.0	0.0	2857.0	312.0	762.0	0	0
t	0	0	793.0	866.0	97.0	56.0	20.0	25.0	4.0	245.0	84.0	2470.0	663.0	0	0
MA0759.1_shift3 (ELK3)
; oligos_6nt_mkv4_m43 versus MA0759.1 (ELK3); m=2/24; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.839017; ---aCCGGAAGTr--
; cor=; Ncor=
a	0	0	0	2237.0	269.0	120.0	1.0	2.0	2237.0	2237.0	498.0	151.0	778.0	0	0
c	0	0	0	294.0	2237.0	2237.0	0.0	4.0	7.0	43.0	245.0	487.0	318.0	0	0
g	0	0	0	713.0	223.0	14.0	2237.0	2237.0	3.0	0.0	2237.0	168.0	649.0	0	0
t	0	0	0	456.0	77.0	8.0	0.0	78.0	1.0	353.0	58.0	2237.0	492.0	0	0
MA0028.2_shift3 (ELK1)
; oligos_6nt_mkv4_m43 versus MA0028.2 (ELK1); m=3/24; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.834123; ---ACCGGAAGTr--
; cor=; Ncor=
a	0	0	0	45807.0	1217.0	359.0	0.0	4.0	45807.0	45807.0	3016.0	916.0	13274.0	0	0
c	0	0	0	2750.0	45807.0	45807.0	21.0	41.0	233.0	333.0	2361.0	6309.0	6673.0	0	0
g	0	0	0	12959.0	1478.0	59.0	45807.0	45807.0	62.0	60.0	45807.0	1123.0	17273.0	0	0
t	0	0	0	5718.0	236.0	21.0	26.0	713.0	25.0	2165.0	294.0	45807.0	8587.0	0	0
MA1484.1_shift2 (ETS2)
; oligos_6nt_mkv4_m43 versus MA1484.1 (ETS2); m=4/24; ncol2=10; w=10; offset=0; strand=D; shift=2; score=0.826096; --rACCGGAWGy---
; cor=; Ncor=
a	0	0	5261.0	16738.0	643.0	1279.0	7.0	4.0	16738.0	11582.0	3050.0	0.0	0	0	0
c	0	0	2830.0	471.0	16738.0	16738.0	0.0	7.0	13.0	204.0	0.0	8136.0	0	0	0
g	0	0	5702.0	3136.0	1306.0	0.0	16738.0	16738.0	7.0	0.0	13730.0	415.0	0	0	0
t	0	0	2945.0	727.0	0.0	0.0	5.0	0.0	0.0	4953.0	0.0	8190.0	0	0	0
MA0156.2_shift3 (FEV)
; oligos_6nt_mkv4_m43 versus MA0156.2 (FEV); m=5/24; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.819909; ---aCCGGAArTr--
; cor=; Ncor=
a	0	0	0	7249.0	1165.0	614.0	13.0	2.0	7249.0	7249.0	3318.0	444.0	2134.0	0	0
c	0	0	0	574.0	7249.0	7249.0	0.0	1.0	11.0	154.0	366.0	1821.0	1358.0	0	0
g	0	0	0	1555.0	718.0	51.0	7249.0	7249.0	3.0	6.0	7249.0	624.0	2257.0	0	0
t	0	0	0	1629.0	243.0	3.0	2.0	9.0	18.0	2196.0	92.0	7249.0	1499.0	0	0
MA0750.2_shift2 (ZBTB7A)
; oligos_6nt_mkv4_m43 versus MA0750.2 (ZBTB7A); m=6/24; ncol2=13; w=11; offset=0; strand=D; shift=2; score=0.818936; --rsCCGGAAGtgss
; cor=; Ncor=
a	0	0	4136.0	2783.0	477.0	2490.0	173.0	114.0	13854.0	13719.0	629.0	1141.0	1744.0	2709.0	2850.0
c	0	0	3512.0	5356.0	12469.0	11293.0	210.0	163.0	274.0	343.0	711.0	3433.0	2485.0	4386.0	4856.0
g	0	0	4167.0	4397.0	1496.0	624.0	14130.0	14239.0	335.0	261.0	13112.0	1623.0	9142.0	5862.0	4669.0
t	0	0	2826.0	2105.0	199.0	234.0	128.0	125.0	178.0	318.0	189.0	8444.0	1270.0	1684.0	2266.0
MA1483.1_shift1 (ELF2)
; oligos_6nt_mkv4_m43 versus MA1483.1 (ELF2); m=7/24; ncol2=12; w=11; offset=-1; strand=D; shift=1; score=0.816793; -aACCCGGAAGTr--
; cor=; Ncor=
a	0	9934.0	20352.0	6114.0	544.0	592.0	0.0	21.0	20352.0	20352.0	3123.0	946.0	8041.0	0	0
c	0	2913.0	1981.0	20352.0	20352.0	20352.0	0.0	2.0	5.0	6.0	383.0	2943.0	2743.0	0	0
g	0	3382.0	428.0	980.0	1806.0	5.0	20352.0	20352.0	6.0	0.0	20352.0	177.0	7278.0	0	0
t	0	4123.0	3941.0	2372.0	17.0	7.0	0.0	8.0	0.0	89.0	0.0	20352.0	2291.0	0	0
MA0641.1_shift1 (ELF4)
; oligos_6nt_mkv4_m43 versus MA0641.1 (ELF4); m=8/24; ncol2=12; w=11; offset=-1; strand=D; shift=1; score=0.811265; -aACCCGGAAGTr--
; cor=; Ncor=
a	0	598.0	705.0	198.0	17.0	54.0	1.0	0.0	739.0	737.0	43.0	4.0	403.0	0	0
c	0	109.0	73.0	930.0	990.0	997.0	0.0	0.0	0.0	5.0	18.0	56.0	83.0	0	0
g	0	160.0	15.0	75.0	105.0	6.0	1226.0	1226.0	2.0	2.0	1207.0	28.0	463.0	0	0
t	0	192.0	149.0	106.0	1.0	0.0	0.0	2.0	2.0	4.0	6.0	979.0	113.0	0	0
MA0645.1_shift3 (ETV6)
; oligos_6nt_mkv4_m43 versus MA0645.1 (ETV6); m=9/24; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.807278; ---msCGGAAGTr--
; cor=; Ncor=
a	0	0	0	9414.0	342.0	1476.0	7.0	21.0	6687.0	6687.0	768.0	184.0	2049.0	0	0
c	0	0	0	6562.0	2394.0	6379.0	0.0	0.0	0.0	13.0	52.0	834.0	342.0	0	0
g	0	0	0	4684.0	4292.0	397.0	6687.0	6687.0	7.0	32.0	6687.0	233.0	3205.0	0	0
t	0	0	0	2002.0	441.0	308.0	13.0	22.0	0.0	41.0	0.0	6687.0	1091.0	0	0
MA0763.1_shift3 (ETV3)
; oligos_6nt_mkv4_m43 versus MA0763.1 (ETV3); m=10/24; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.805488; ---ACCGGAAGTg--
; cor=; Ncor=
a	0	0	0	215.0	18.0	9.0	0.0	0.0	215.0	215.0	58.0	0.0	52.0	0	0
c	0	0	0	27.0	215.0	215.0	0.0	0.0	8.0	0.0	14.0	32.0	41.0	0	0
g	0	0	0	38.0	14.0	0.0	215.0	215.0	0.0	0.0	215.0	7.0	98.0	0	0
t	0	0	0	24.0	31.0	13.0	14.0	16.0	4.0	71.0	0.0	215.0	25.0	0	0
MA0474.2_shift3 (ERG)
; oligos_6nt_mkv4_m43 versus MA0474.2 (ERG); m=11/24; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.805203; ---ACCGGAArTg--
; cor=; Ncor=
a	0	0	0	4566.0	646.0	635.0	1.0	0.0	4566.0	4566.0	1990.0	137.0	1006.0	0	0
c	0	0	0	268.0	4566.0	4566.0	0.0	1.0	20.0	119.0	100.0	1586.0	1100.0	0	0
g	0	0	0	848.0	398.0	22.0	4566.0	4566.0	0.0	7.0	2576.0	355.0	1668.0	0	0
t	0	0	0	928.0	97.0	6.0	0.0	29.0	7.0	1245.0	28.0	4566.0	792.0	0	0
MA0098.3_shift3 (ETS1)
; oligos_6nt_mkv4_m43 versus MA0098.3 (ETS1); m=12/24; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.80415; ---ACCGGAWrTr--
; cor=; Ncor=
a	0	0	0	2683.0	180.0	425.0	0.0	0.0	2683.0	2683.0	1102.0	89.0	803.0	0	0
c	0	0	0	210.0	2683.0	2683.0	21.0	0.0	0.0	9.0	21.0	712.0	401.0	0	0
g	0	0	0	640.0	297.0	7.0	2683.0	2683.0	0.0	31.0	1580.0	124.0	1083.0	0	0
t	0	0	0	241.0	22.0	0.0	0.0	12.0	0.0	909.0	12.0	1970.0	396.0	0	0
MA0076.2_rc_shift3 (ELK4_rc)
; oligos_6nt_mkv4_m43 versus MA0076.2_rc (ELK4_rc); m=13/24; ncol2=11; w=10; offset=1; strand=R; shift=3; score=0.803224; ---rCCGGAAGygs-
; cor=; Ncor=
a	0	0	0	1216.0	83.0	512.0	0.0	0.0	3427.0	3419.0	723.0	210.0	561.0	785.0	0
c	0	0	0	668.0	2843.0	2915.0	0.0	0.0	0.0	0.0	16.0	1038.0	570.0	886.0	0
g	0	0	0	1253.0	501.0	0.0	3427.0	3427.0	0.0	0.0	2688.0	145.0	1905.0	1458.0	0
t	0	0	0	290.0	0.0	0.0	0.0	0.0	0.0	8.0	0.0	2034.0	391.0	298.0	0
MA0475.2_shift3 (FLI1)
; oligos_6nt_mkv4_m43 versus MA0475.2 (FLI1); m=14/24; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.801345; ---ACCGGAArTg--
; cor=; Ncor=
a	0	0	0	43586.0	2926.0	2806.0	5.0	0.0	43586.0	43586.0	19102.0	897.0	10642.0	0	0
c	0	0	0	1460.0	43586.0	43586.0	0.0	0.0	21.0	230.0	563.0	11173.0	7716.0	0	0
g	0	0	0	5132.0	1858.0	90.0	43586.0	43586.0	19.0	24.0	24484.0	1986.0	18560.0	0	0
t	0	0	0	4483.0	292.0	0.0	2.0	60.0	11.0	6065.0	83.0	32413.0	6668.0	0	0
MA0760.1_shift3 (ERF)
; oligos_6nt_mkv4_m43 versus MA0760.1 (ERF); m=15/24; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.796672; ---ACCGGAArTr--
; cor=; Ncor=
a	0	0	0	205.0	7.0	25.0	0.0	0.0	205.0	205.0	82.0	0.0	62.0	0	0
c	0	0	0	4.0	205.0	205.0	0.0	3.0	3.0	0.0	17.0	41.0	28.0	0	0
g	0	0	0	33.0	8.0	6.0	205.0	205.0	3.0	0.0	205.0	11.0	92.0	0	0
t	0	0	0	3.0	34.0	0.0	0.0	0.0	2.0	30.0	0.0	205.0	22.0	0	0
MA0765.2_rc_shift3 (ETV5_rc)
; oligos_6nt_mkv4_m43 versus MA0765.2_rc (ETV5_rc); m=16/24; ncol2=11; w=10; offset=1; strand=R; shift=3; score=0.780348; ---rsCGGAAGTgv-
; cor=; Ncor=
a	0	0	0	7222.0	4436.0	4523.0	392.0	255.0	24324.0	23722.0	971.0	1448.0	5100.0	6667.0	0
c	0	0	0	6039.0	11944.0	18757.0	498.0	336.0	816.0	408.0	994.0	3017.0	6129.0	7117.0	0
g	0	0	0	8378.0	6921.0	1743.0	25061.0	25484.0	956.0	1145.0	24041.0	2443.0	10307.0	8003.0	0
t	0	0	0	4679.0	3017.0	1295.0	367.0	243.0	222.0	1043.0	312.0	19410.0	4782.0	4531.0	0
MA0762.1_shift2 (ETV2)
; oligos_6nt_mkv4_m43 versus MA0762.1 (ETV2); m=17/24; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.775329; --aACCGGAARYr--
; cor=; Ncor=
a	0	0	1184.0	1184.0	57.0	116.0	0.0	0.0	1184.0	1184.0	846.0	18.0	742.0	0	0
c	0	0	251.0	10.0	1184.0	1184.0	0.0	0.0	0.0	1.0	2.0	440.0	161.0	0	0
g	0	0	398.0	23.0	109.0	3.0	1184.0	1184.0	0.0	0.0	337.0	66.0	441.0	0	0
t	0	0	369.0	5.0	0.0	0.0	0.0	0.0	0.0	143.0	0.0	1184.0	231.0	0	0
MA0686.1_shift2 (SPDEF)
; oligos_6nt_mkv4_m43 versus MA0686.1 (SPDEF); m=18/24; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.73145; --AmCCGGATgTr--
; cor=; Ncor=
a	0	0	4628.0	1890.0	52.0	237.0	2.0	6.0	4628.0	532.0	1566.0	58.0	1911.0	0	0
c	0	0	101.0	2737.0	4628.0	4628.0	2.0	0.0	0.0	69.0	601.0	1345.0	568.0	0	0
g	0	0	176.0	536.0	92.0	1.0	4628.0	4628.0	6.0	11.0	4628.0	28.0	1339.0	0	0
t	0	0	912.0	77.0	0.0	1.0	0.0	8.0	2.0	4628.0	66.0	4628.0	810.0	0	0
MA0764.2_shift3 (ETV4)
; oligos_6nt_mkv4_m43 versus MA0764.2 (ETV4); m=19/24; ncol2=10; w=10; offset=1; strand=D; shift=3; score=0.702477; ---rcAGGAAGyr--
; cor=; Ncor=
a	0	0	0	3119.0	1206.0	8353.0	0.0	1.0	8374.0	8333.0	11.0	1296.0	2336.0	0	0
c	0	0	0	1494.0	4608.0	61.0	92.0	1.0	0.0	73.0	28.0	2194.0	1597.0	0	0
g	0	0	0	2721.0	1936.0	0.0	8308.0	8345.0	0.0	0.0	8344.0	1949.0	3055.0	0	0
t	0	0	0	1080.0	664.0	0.0	14.0	67.0	40.0	8.0	31.0	2975.0	1426.0	0	0
MA0761.2_shift1 (ETV1)
; oligos_6nt_mkv4_m43 versus MA0761.2 (ETV1); m=20/24; ncol2=14; w=11; offset=-1; strand=D; shift=1; score=0.597665; -rraCAGGAAGTgrr
; cor=; Ncor=
a	0	12622.0	11359.0	22801.0	1848.0	33305.0	231.0	378.0	36130.0	33368.0	4235.0	3343.0	7922.0	11678.0	9861.0
c	0	7468.0	8638.0	4339.0	32139.0	3064.0	275.0	271.0	471.0	486.0	1307.0	3889.0	5060.0	7475.0	9114.0
g	0	9643.0	10407.0	6015.0	2389.0	573.0	36483.0	36121.0	375.0	412.0	31256.0	3146.0	18967.0	10820.0	9698.0
t	0	7606.0	6935.0	4184.0	963.0	397.0	350.0	569.0	363.0	3073.0	541.0	26961.0	5390.0	7366.0	8666.0
MA0473.3_shift1 (ELF1)
; oligos_6nt_mkv4_m43 versus MA0473.3 (ELF1); m=21/24; ncol2=14; w=11; offset=-1; strand=D; shift=1; score=0.596953; -aamCAGGAAGTGrv
; cor=; Ncor=
a	0	18678.0	18648.0	17440.0	3094.0	42164.0	320.0	649.0	45930.0	45243.0	4063.0	3009.0	5688.0	12561.0	12020.0
c	0	8627.0	7834.0	12699.0	37923.0	4038.0	421.0	505.0	796.0	705.0	1570.0	1993.0	4236.0	11843.0	12681.0
g	0	11540.0	11305.0	10440.0	4819.0	932.0	46642.0	45970.0	676.0	779.0	41738.0	2007.0	34757.0	16920.0	13472.0
t	0	8925.0	9983.0	7191.0	1934.0	636.0	387.0	646.0	368.0	1043.0	399.0	40761.0	3089.0	6446.0	9597.0
MA0062.3_rc_shift1 (GABPA_rc)
; oligos_6nt_mkv4_m43 versus MA0062.3_rc (GABPA_rc); m=22/24; ncol2=14; w=11; offset=-1; strand=R; shift=1; score=0.586588; -rraCAGGAAGTgrr
; cor=; Ncor=
a	0	21388.0	20341.0	40409.0	5012.0	57654.0	859.0	1558.0	61754.0	59186.0	6717.0	4358.0	9453.0	19068.0	16725.0
c	0	13187.0	15081.0	7720.0	51920.0	4561.0	520.0	1150.0	1633.0	965.0	2169.0	4873.0	6989.0	13751.0	15945.0
g	0	17382.0	18154.0	12006.0	6328.0	1542.0	63107.0	61373.0	1230.0	1443.0	55664.0	3988.0	41398.0	21679.0	16922.0
t	0	13522.0	11903.0	5344.0	2219.0	1722.0	993.0	1398.0	862.0	3885.0	929.0	52260.0	7639.0	10981.0	15887.0
MA0640.2_rc_shift2 (ELF3_rc)
; oligos_6nt_mkv4_m43 versus MA0640.2_rc (ELF3_rc); m=23/24; ncol2=14; w=11; offset=0; strand=R; shift=2; score=0.579683; --avcAGGAAGTggr
; cor=; Ncor=
a	0	0	22757.0	12256.0	8528.0	44422.0	475.0	793.0	46173.0	45195.0	4633.0	3204.0	9951.0	11157.0	13593.0
c	0	0	6001.0	13945.0	28319.0	1989.0	473.0	566.0	954.0	768.0	1365.0	2615.0	4122.0	6930.0	11894.0
g	0	0	9085.0	13291.0	9278.0	1315.0	47107.0	46481.0	943.0	1368.0	41950.0	2040.0	27973.0	24731.0	13181.0
t	0	0	10659.0	9010.0	2377.0	776.0	447.0	662.0	432.0	1171.0	554.0	40643.0	6456.0	5684.0	9834.0
MA0598.3_rc_shift0 (EHF_rc)
; oligos_6nt_mkv4_m43 versus MA0598.3_rc (EHF_rc); m=24/24; ncol2=15; w=11; offset=-2; strand=R; shift=0; score=0.542347; raaacAGGAAGTgrs
; cor=; Ncor=
a	4262.0	5393.0	10095.0	6725.0	2629.0	12794.0	112.0	201.0	14865.0	14622.0	1706.0	723.0	2827.0	4683.0	3665.0
c	3194.0	3088.0	1264.0	3299.0	9061.0	1538.0	101.0	139.0	199.0	152.0	377.0	775.0	1540.0	3355.0	4102.0
g	4829.0	3671.0	1762.0	3029.0	2983.0	608.0	14997.0	14833.0	164.0	167.0	13116.0	456.0	8887.0	4628.0	4341.0
t	3083.0	3216.0	2247.0	2315.0	695.0	428.0	158.0	195.0	140.0	427.0	169.0	13414.0	2114.0	2702.0	3260.0