One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m44/peak-motifs_oligos_6nt_mkv4_m44.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m44/peak-motifs_oligos_6nt_mkv4_m44_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m44_shift3 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv4_m44_shift3 (oligos_6nt_mkv4_m44oligos_6nt_mkv4_m44)     
; oligos_6nt_mkv4_m44 (oligos_6nt_mkv4_m44oligos_6nt_mkv4_m44); m=0 (reference); ncol1=10; shift=3; ncol=16; ---csACTCCAss---
; Alignment reference
a	0	0	0	904	818	3811	0	0	0	0	3811	537	825	0	0	0
c	0	0	0	1043	1356	0	3811	0	3811	3810	0	981	1242	0	0	0
g	0	0	0	927	1218	0	0	0	0	1	0	1720	994	0	0	0
t	0	0	0	937	419	0	0	3811	0	0	0	573	750	0	0	0
MA0063.2_shift2 (NKX2-5) 
; oligos_6nt_mkv4_m44 versus MA0063.2 (NKX2-5); m=1/5; ncol2=11; w=10; offset=-1; strand=D; shift=2; score= 0.6616; --rmCACTCAAva---
; cor=; Ncor=
a	0	0	1723.0	1526.0	96.0	5246.0	144.0	135.0	222.0	4819.0	4931.0	1485.0	1827.0	0	0	0
c	0	0	1024.0	1646.0	5002.0	48.0	5098.0	82.0	4319.0	120.0	165.0	1406.0	1251.0	0	0	0
g	0	0	1687.0	1318.0	24.0	76.0	49.0	61.0	62.0	217.0	98.0	1478.0	1084.0	0	0	0
t	0	0	1010.0	954.0	322.0	74.0	153.0	5166.0	841.0	288.0	250.0	1075.0	1282.0	0	0	0
MA0503.1_shift1 (Nkx2-5(var.2)) 
; oligos_6nt_mkv4_m44 versus MA0503.1 (Nkx2-5(var.2)); m=2/5; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=0.536613; -arsCWCTCAas----
; cor=; Ncor=
a	0	1790.0	1282.0	344.0	0.0	2467.0	0.0	0.0	0.0	2858.0	2265.0	502.0	0	0	0	0
c	0	327.0	192.0	1777.0	3429.0	6.0	3429.0	0.0	3391.0	431.0	3.0	956.0	0	0	0	0
g	0	821.0	1467.0	1292.0	0.0	0.0	0.0	0.0	0.0	0.0	825.0	1795.0	0	0	0	0
t	0	491.0	488.0	16.0	0.0	956.0	0.0	3429.0	38.0	140.0	336.0	176.0	0	0	0	0
MA1645.1_shift0 (NKX2-2) 
; oligos_6nt_mkv4_m44 versus MA1645.1 (NKX2-2); m=3/5; ncol2=14; w=10; offset=-3; strand=D; shift=0; score=0.518177; hawCCACTCAAvwa--
; cor=; Ncor=
a	6953.0	9464.0	7295.0	2438.0	618.0	23748.0	478.0	490.0	397.0	21326.0	20003.0	6909.0	7980.0	7413.0	0	0
c	6959.0	5638.0	5558.0	20232.0	24341.0	463.0	24693.0	452.0	24058.0	2772.0	2104.0	6627.0	5942.0	6271.0	0	0
g	4904.0	4854.0	6329.0	2293.0	176.0	257.0	420.0	295.0	838.0	580.0	2266.0	7589.0	5554.0	6050.0	0	0
t	7207.0	6067.0	6841.0	1060.0	888.0	1555.0	432.0	24786.0	730.0	1345.0	1650.0	4898.0	6547.0	6289.0	0	0
MA0130.1_shift6 (ZNF354C) 
; oligos_6nt_mkv4_m44 versus MA0130.1 (ZNF354C); m=4/5; ncol2=6; w=6; offset=3; strand=D; shift=6; score=0.480991; ------mTCCAC----
; cor=; Ncor=
a	0	0	0	0	0	0	7.0	3.0	0.0	0.0	16.0	0.0	0	0	0	0
c	0	0	0	0	0	0	6.0	2.0	16.0	16.0	0.0	15.0	0	0	0	0
g	0	0	0	0	0	0	3.0	0.0	0.0	0.0	0.0	1.0	0	0	0	0
t	0	0	0	0	0	0	0.0	11.0	0.0	0.0	0.0	0.0	0	0	0	0
MA1579.1_shift4 (ZBTB26) 
; oligos_6nt_mkv4_m44 versus MA1579.1 (ZBTB26); m=5/5; ncol2=15; w=9; offset=1; strand=D; shift=4; score=0.422388; ----tdcTCCAGAAaa
; cor=; Ncor=
a	0	0	0	0	399.0	449.0	274.0	9.0	20.0	5.0	1535.0	27.0	1582.0	1134.0	669.0	583.0
c	0	0	0	0	386.0	342.0	872.0	5.0	1592.0	1503.0	17.0	3.0	22.0	138.0	327.0	378.0
g	0	0	0	0	402.0	412.0	123.0	5.0	12.0	13.0	49.0	1581.0	9.0	223.0	322.0	338.0
t	0	0	0	0	440.0	424.0	358.0	1608.0	3.0	106.0	26.0	16.0	14.0	132.0	309.0	328.0