One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m49/peak-motifs_oligos_6nt_mkv4_m49.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m49/peak-motifs_oligos_6nt_mkv4_m49_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m49_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m49_shift0 (oligos_6nt_mkv4_m49oligos_6nt_mkv4_m49)
; oligos_6nt_mkv4_m49 (oligos_6nt_mkv4_m49oligos_6nt_mkv4_m49); m=0 (reference); ncol1=10; shift=0; ncol=14; ssACTGTArs---- ; Alignment reference a 418 397 1847 4 0 32 0 1847 511 434 0 0 0 0 c 484 701 0 1840 19 0 0 0 416 565 0 0 0 0 g 496 488 0 2 19 1807 0 0 626 476 0 0 0 0 t 449 261 0 1 1809 8 1847 0 294 372 0 0 0 0

MA1580.1_rc_shift0 (ZBTB32_rc)
; oligos_6nt_mkv4_m49 versus MA1580.1_rc (ZBTB32_rc); m=1/3; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.875332; wtACTGTACa---- ; cor=; Ncor= a 1574.0 339.0 3558.0 6.0 8.0 0.0 0.0 3563.0 156.0 1849.0 0 0 0 0 c 215.0 723.0 0.0 3562.0 4.0 1.0 0.0 3.0 3057.0 65.0 0 0 0 0 g 213.0 109.0 4.0 3.0 3.0 3560.0 5.0 1.0 3.0 764.0 0 0 0 0 t 1559.0 2390.0 0.0 0.0 3556.0 0.0 3560.0 5.0 356.0 882.0 0 0 0 0

MA1542.1_rc_shift1 (OSR1_rc)
; oligos_6nt_mkv4_m49 versus MA1542.1_rc (OSR1_rc); m=2/3; ncol2=10; w=9; offset=1; strand=R; shift=1; score=0.58184; -mACrGTAGCr--- ; cor=; Ncor= a 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 0 0 c 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 0 0 g 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 0 0 t 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0 0 0

MA1478.1_rc_shift2 (DMRTA2_rc)
; oligos_6nt_mkv4_m49 versus MA1478.1_rc (DMRTA2_rc); m=3/3; ncol2=12; w=8; offset=2; strand=R; shift=2; score=0.417872; --awTGTAwCaatt ; cor=; Ncor= a 0 0 1710.0 1710.0 261.0 3.0 13.0 1710.0 983.0 6.0 1710.0 1710.0 395.0 348.0 c 0 0 432.0 662.0 78.0 0.0 71.0 29.0 10.0 1710.0 557.0 380.0 292.0 276.0 g 0 0 399.0 378.0 23.0 1710.0 9.0 147.0 527.0 1.0 773.0 433.0 183.0 320.0 t 0 0 357.0 931.0 1710.0 0.0 1710.0 578.0 727.0 0.0 324.0 822.0 839.0 765.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m49_shift0 (oligos_6nt_mkv4_m49oligos_6nt_mkv4_m49)				; oligos_6nt_mkv4_m49 (oligos_6nt_mkv4_m49oligos_6nt_mkv4_m49); m=0 (reference); ncol1=10; shift=0; ncol=14; ssACTGTArs---- ; Alignment reference a 418 397 1847 4 0 32 0 1847 511 434 0 0 0 0 c 484 701 0 1840 19 0 0 0 416 565 0 0 0 0 g 496 488 0 2 19 1807 0 0 626 476 0 0 0 0 t 449 261 0 1 1809 8 1847 0 294 372 0 0 0 0
MA1580.1_rc_shift0 (ZBTB32_rc)				; oligos_6nt_mkv4_m49 versus MA1580.1_rc (ZBTB32_rc); m=1/3; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.875332; wtACTGTACa---- ; cor=; Ncor= a 1574.0 339.0 3558.0 6.0 8.0 0.0 0.0 3563.0 156.0 1849.0 0 0 0 0 c 215.0 723.0 0.0 3562.0 4.0 1.0 0.0 3.0 3057.0 65.0 0 0 0 0 g 213.0 109.0 4.0 3.0 3.0 3560.0 5.0 1.0 3.0 764.0 0 0 0 0 t 1559.0 2390.0 0.0 0.0 3556.0 0.0 3560.0 5.0 356.0 882.0 0 0 0 0
MA1542.1_rc_shift1 (OSR1_rc)				; oligos_6nt_mkv4_m49 versus MA1542.1_rc (OSR1_rc); m=2/3; ncol2=10; w=9; offset=1; strand=R; shift=1; score=0.58184; -mACrGTAGCr--- ; cor=; Ncor= a 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 0 0 c 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 0 0 g 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 0 0 t 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0 0 0
MA1478.1_rc_shift2 (DMRTA2_rc)				; oligos_6nt_mkv4_m49 versus MA1478.1_rc (DMRTA2_rc); m=3/3; ncol2=12; w=8; offset=2; strand=R; shift=2; score=0.417872; --awTGTAwCaatt ; cor=; Ncor= a 0 0 1710.0 1710.0 261.0 3.0 13.0 1710.0 983.0 6.0 1710.0 1710.0 395.0 348.0 c 0 0 432.0 662.0 78.0 0.0 71.0 29.0 10.0 1710.0 557.0 380.0 292.0 276.0 g 0 0 399.0 378.0 23.0 1710.0 9.0 147.0 527.0 1.0 773.0 433.0 183.0 320.0 t 0 0 357.0 931.0 1710.0 0.0 1710.0 578.0 727.0 0.0 324.0 822.0 839.0 765.0