Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m50/peak-motifs_oligos_6nt_mkv4_m50.tf
		file1	1	10	3283
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv4_m50 MA1108.2 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 MXI1 0.772 0.772 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m50 MA0461.2 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 Atoh1 0.771 0.771 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m50 MA1638.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 HAND2 0.770 0.770 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m50 MA0100.3 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 MYB 0.760 0.760 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m50 MA0633.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 Twist2 0.752 0.752 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m50 MA0623.2 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 NEUROG1 0.751 0.751 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m50 MA1570.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 TFAP4(var.2) 0.744 0.744 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m50 MA1468.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 ATOH7 0.742 0.742 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m50 MA0669.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 NEUROG2 0.739 0.739 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m50 MA0668.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 NEUROD2 0.730 0.730 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m50 MA0818.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 BHLHE22 0.730 0.730 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m50 MA0826.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 OLIG1 0.711 0.711 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m50 MA0678.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 OLIG2 0.710 0.710 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m50 MA0827.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 OLIG3 0.709 0.709 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m50 MA1524.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 MSGN1 0.832 0.693 10 12 10 12 0.8333 1.0000 0.8333 R -1
oligos_6nt_mkv4_m50 MA0607.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 Bhlha15 0.770 0.616 10 8 8 10 0.8000 0.8000 1.0000 R 1
oligos_6nt_mkv4_m50 MA0817.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 BHLHE23 0.717 0.598 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6nt_mkv4_m50 MA1568.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 TCF21(var.2) 0.707 0.589 10 12 10 12 0.8333 1.0000 0.8333 R -1
oligos_6nt_mkv4_m50 MA1642.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 NEUROG2(var.2) 0.765 0.588 10 13 10 13 0.7692 1.0000 0.7692 D -2
oligos_6nt_mkv4_m50 MA0507.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 POU2F2 0.747 0.575 10 13 10 13 0.7692 1.0000 0.7692 R -3
oligos_6nt_mkv4_m50 MA1618.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 Ptf1a 0.746 0.574 10 13 10 13 0.7692 1.0000 0.7692 D -1
oligos_6nt_mkv4_m50 MA1123.2 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 TWIST1 0.734 0.564 10 13 10 13 0.7692 1.0000 0.7692 D -2
oligos_6nt_mkv4_m50 MA1109.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 NEUROD1 0.732 0.563 10 13 10 13 0.7692 1.0000 0.7692 D -1
oligos_6nt_mkv4_m50 MA0514.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 Sox3 0.714 0.476 10 10 8 12 0.6667 0.8000 0.8000 R -2
oligos_6nt_mkv4_m50 MA0627.2 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 POU2F3 0.737 0.474 10 13 9 14 0.6429 0.9000 0.6923 D -4
oligos_6nt_mkv4_m50 MA0792.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 POU5F1B 0.749 0.437 10 9 7 12 0.5833 0.7000 0.7778 D -2
oligos_6nt_mkv4_m50 MA0789.1 oligos_6nt_mkv4_m50oligos_6nt_mkv4_m50 POU3F4 0.736 0.429 10 9 7 12 0.5833 0.7000 0.7778 D -2 
 Host name	pedagogix
 Job started	2020-04-14.152652
 Job done	2020-04-14.152714
 Seconds	3.57
	user	3.57
	system	0.43
	cuser	17.37
;	csystem	1.23