One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m8/peak-motifs_oligos_6nt_mkv4_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_6nt_mkv4_m8/peak-motifs_oligos_6nt_mkv4_m8_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m8_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv4_m8_shift0 (oligos_6nt_mkv4_m8oligos_6nt_mkv4_m8) |
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; oligos_6nt_mkv4_m8 (oligos_6nt_mkv4_m8oligos_6nt_mkv4_m8); m=0 (reference); ncol1=13; shift=0; ncol=13; ssCCAGCCCAGss
; Alignment reference
a 646 469 45 7 3112 60 16 7 244 2722 131 676 635
c 971 1355 3392 3316 240 83 3436 3386 2965 284 294 1301 1221
g 1062 936 25 115 122 3247 10 76 116 238 2915 1001 884
t 797 716 14 38 2 86 14 7 151 232 136 498 736
|
| MA1513.1_shift0 (KLF15) |
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; oligos_6nt_mkv4_m8 versus MA1513.1 (KLF15); m=1/1; ncol2=11; w=11; offset=0; strand=D; shift=0; score=0.618092; scCCCGCCCcs--
; cor=; Ncor=
a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0
c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0
g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0
t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0
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