Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10.tf
		file1	1	11	2560
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m10 MA1564.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 SP9 0.796 0.613 11 12 10 13 0.7692 0.9091 0.8333 D -2
oligos_7nt_mkv5_m10 MA0162.4 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 EGR1 0.768 0.603 11 14 11 14 0.7857 1.0000 0.7857 D -1
oligos_7nt_mkv5_m10 MA0748.2 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 YY2 0.720 0.600 11 11 10 12 0.8333 0.9091 0.9091 R -1
oligos_7nt_mkv5_m10 MA0472.2 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 EGR2 0.707 0.589 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv5_m10 MA0740.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 KLF14 0.720 0.566 11 14 11 14 0.7857 1.0000 0.7857 D -3
oligos_7nt_mkv5_m10 MA0747.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 SP8 0.717 0.552 11 12 10 13 0.7692 0.9091 0.8333 D -2
oligos_7nt_mkv5_m10 MA0746.2 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 SP3 0.764 0.546 11 13 10 14 0.7143 0.9091 0.7692 D -3
oligos_7nt_mkv5_m10 MA1513.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 KLF15 0.784 0.543 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv5_m10 MA0732.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 EGR3 0.729 0.534 11 15 11 15 0.7333 1.0000 0.7333 D -1
oligos_7nt_mkv5_m10 MA1512.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 KLF11 0.763 0.528 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv5_m10 MA0742.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 Klf12 0.714 0.524 11 15 11 15 0.7333 1.0000 0.7333 D -3
oligos_7nt_mkv5_m10 MA0741.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 KLF16 0.742 0.514 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv5_m10 MA0733.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 EGR4 0.746 0.513 11 16 11 16 0.6875 1.0000 0.6875 D -1
oligos_7nt_mkv5_m10 MA0516.2 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 SP2 0.751 0.486 11 17 11 17 0.6471 1.0000 0.6471 D -6
oligos_7nt_mkv5_m10 MA0599.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 KLF5 0.789 0.485 11 10 8 13 0.6154 0.7273 0.8000 D -2
oligos_7nt_mkv5_m10 MA1516.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 KLF3 0.844 0.482 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_7nt_mkv5_m10 MA0685.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 SP4 0.742 0.480 11 17 11 17 0.6471 1.0000 0.6471 D -5
oligos_7nt_mkv5_m10 MA0079.4 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 SP1 0.764 0.478 11 15 10 16 0.6250 0.9091 0.6667 D -5
oligos_7nt_mkv5_m10 MA1515.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 KLF2 0.820 0.468 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_7nt_mkv5_m10 MA1517.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 KLF6 0.782 0.447 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_7nt_mkv5_m10 MA0471.2 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 E2F6 0.726 0.436 11 13 9 15 0.6000 0.8182 0.6923 R -4
oligos_7nt_mkv5_m10 MA0139.1 oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10 CTCF 0.711 0.411 11 19 11 19 0.5789 1.0000 0.5789 R -1 
 Host name	pedagogix
 Job started	2020-04-14.154706
 Job done	2020-04-14.154730
 Seconds	4.01
	user	4.02
	system	0.49
	cuser	18.44
;	csystem	1.22