One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m10/peak-motifs_oligos_7nt_mkv5_m10_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m10_shift6 ; 23 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv5_m10_shift6 (oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10)     
; oligos_7nt_mkv5_m10 (oligos_7nt_mkv5_m10oligos_7nt_mkv5_m10); m=0 (reference); ncol1=11; shift=6; ncol=19; ------ssCGCCCTCss--
; Alignment reference
a	0	0	0	0	0	0	297	331	0	0	17	0	8	0	10	269	276	0	0
c	0	0	0	0	0	0	1270	1023	2560	0	2514	2440	2295	0	2550	972	928	0	0
g	0	0	0	0	0	0	661	892	0	2560	0	120	257	141	0	787	938	0	0
t	0	0	0	0	0	0	332	314	0	0	29	0	0	2419	0	532	418	0	0
MA1564.1_shift4 (SP9) 
; oligos_7nt_mkv5_m10 versus MA1564.1 (SP9); m=1/22; ncol2=12; w=10; offset=-2; strand=D; shift=4; score=0.612623; ----rcCmCGCCCmcy---
; cor=; Ncor=
a	0	0	0	0	834.0	566.0	321.0	2451.0	2.0	211.0	22.0	0.0	39.0	1192.0	188.0	420.0	0	0	0
c	0	0	0	0	440.0	2451.0	2451.0	1127.0	2451.0	200.0	2451.0	2451.0	2451.0	1259.0	1863.0	1167.0	0	0	0
g	0	0	0	0	952.0	309.0	113.0	56.0	17.0	2451.0	0.0	0.0	24.0	38.0	191.0	204.0	0	0	0
t	0	0	0	0	226.0	518.0	284.0	96.0	9.0	173.0	14.0	30.0	412.0	353.0	588.0	660.0	0	0	0
MA0162.4_shift5 (EGR1) 
; oligos_7nt_mkv5_m10 versus MA0162.4 (EGR1); m=2/22; ncol2=14; w=11; offset=-1; strand=D; shift=5; score=0.603388; -----ccmCGCCCACgCms
; cor=; Ncor=
a	0	0	0	0	0	7087.0	3997.0	14508.0	642.0	5110.0	227.0	1440.0	314.0	22297.0	153.0	4696.0	969.0	8903.0	3809.0
c	0	0	0	0	0	11610.0	14749.0	10303.0	28403.0	1131.0	29338.0	27321.0	28958.0	5420.0	29507.0	2806.0	25196.0	10441.0	13686.0
g	0	0	0	0	0	6621.0	7211.0	3854.0	756.0	22237.0	665.0	1455.0	698.0	2122.0	699.0	20544.0	2157.0	6345.0	7852.0
t	0	0	0	0	0	5280.0	4641.0	1933.0	797.0	2120.0	368.0	382.0	628.0	759.0	239.0	2552.0	2276.0	4909.0	5251.0
MA0748.2_rc_shift5 (YY2_rc) 
; oligos_7nt_mkv5_m10 versus MA0748.2_rc (YY2_rc); m=3/22; ncol2=11; w=10; offset=-1; strand=R; shift=5; score=0.60035; -----sgCCGCCATsk---
; cor=; Ncor=
a	0	0	0	0	0	857.0	947.0	303.0	79.0	186.0	101.0	27.0	5248.0	36.0	674.0	1072.0	0	0	0
c	0	0	0	0	0	2373.0	920.0	4474.0	5231.0	25.0	5376.0	5509.0	125.0	359.0	2143.0	1068.0	0	0	0
g	0	0	0	0	0	1535.0	2876.0	516.0	330.0	5384.0	101.0	120.0	273.0	46.0	1607.0	1591.0	0	0	0
t	0	0	0	0	0	939.0	961.0	411.0	64.0	109.0	126.0	48.0	58.0	5263.0	1280.0	1973.0	0	0	0
MA0472.2_shift7 (EGR2) 
; oligos_7nt_mkv5_m10 versus MA0472.2 (EGR2); m=4/22; ncol2=11; w=10; offset=1; strand=D; shift=7; score=0.589268; -------mCGCCCACGCa-
; cor=; Ncor=
a	0	0	0	0	0	0	0	1157.0	0.0	295.0	6.0	24.0	0.0	2147.0	0.0	106.0	4.0	1731.0	0
c	0	0	0	0	0	0	0	679.0	1551.0	0.0	1558.0	1554.0	1468.0	110.0	1573.0	0.0	1585.0	157.0	0
g	0	0	0	0	0	0	0	94.0	28.0	3731.0	25.0	15.0	38.0	26.0	2.0	4034.0	20.0	542.0	0
t	0	0	0	0	0	0	0	142.0	73.0	222.0	29.0	13.0	277.0	2.0	23.0	171.0	115.0	430.0	0
MA0740.1_shift3 (KLF14) 
; oligos_7nt_mkv5_m10 versus MA0740.1 (KLF14); m=5/22; ncol2=14; w=11; offset=-3; strand=D; shift=3; score=0.565913; ---krcCACGCCCmYyt--
; cor=; Ncor=
a	0	0	0	430.0	1205.0	526.0	0.0	1708.0	2.0	69.0	0.0	0.0	0.0	716.0	32.0	280.0	649.0	0	0
c	0	0	0	215.0	73.0	1360.0	1599.0	136.0	1596.0	36.0	1602.0	1604.0	1609.0	961.0	1463.0	594.0	741.0	0	0
g	0	0	0	966.0	2280.0	96.0	10.0	58.0	0.0	2939.0	3.0	3.0	4.0	1.0	15.0	89.0	314.0	0	0
t	0	0	0	693.0	71.0	404.0	248.0	5.0	2.0	31.0	0.0	6.0	65.0	31.0	559.0	1041.0	1670.0	0	0
MA0747.1_shift4 (SP8) 
; oligos_7nt_mkv5_m10 versus MA0747.1 (SP8); m=6/22; ncol2=12; w=10; offset=-2; strand=D; shift=4; score=0.551582; ----rmCACgCCCmCy---
; cor=; Ncor=
a	0	0	0	0	52.0	54.0	25.0	133.0	7.0	25.0	5.0	2.0	0.0	90.0	13.0	31.0	0	0	0
c	0	0	0	0	27.0	113.0	167.0	33.0	167.0	37.0	167.0	167.0	167.0	77.0	167.0	52.0	0	0	0
g	0	0	0	0	78.0	0.0	0.0	1.0	1.0	167.0	6.0	3.0	4.0	6.0	21.0	1.0	0	0	0
t	0	0	0	0	10.0	4.0	13.0	2.0	5.0	39.0	2.0	0.0	15.0	3.0	39.0	82.0	0	0	0
MA0746.2_shift3 (SP3) 
; oligos_7nt_mkv5_m10 versus MA0746.2 (SP3); m=7/22; ncol2=13; w=10; offset=-3; strand=D; shift=3; score=0.545717; ---srCCACGCCCmCy---
; cor=; Ncor=
a	0	0	0	1267.0	2146.0	664.0	160.0	5253.0	6.0	465.0	0.0	0.0	2.0	3430.0	556.0	1516.0	0	0	0
c	0	0	0	1884.0	531.0	6591.0	6591.0	1338.0	6591.0	0.0	6591.0	6591.0	6591.0	3160.0	5116.0	2608.0	0	0	0
g	0	0	0	1895.0	4445.0	226.0	54.0	2.0	0.0	6591.0	0.0	0.0	2.0	39.0	297.0	524.0	0	0	0
t	0	0	0	1545.0	421.0	345.0	202.0	11.0	12.0	504.0	0.0	9.0	718.0	552.0	1475.0	1943.0	0	0	0
MA1513.1_shift4 (KLF15) 
; oligos_7nt_mkv5_m10 versus MA1513.1 (KLF15); m=8/22; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.542847; ----scCCCGCCCcs----
; cor=; Ncor=
a	0	0	0	0	1184.0	937.0	40.0	93.0	0.0	0.0	11.0	55.0	12.0	1566.0	1067.0	0	0	0	0
c	0	0	0	0	2903.0	6506.0	11234.0	10940.0	11368.0	0.0	11345.0	10954.0	11254.0	6267.0	5013.0	0	0	0	0
g	0	0	0	0	5538.0	2117.0	86.0	333.0	1.0	11369.0	2.0	359.0	100.0	1934.0	3124.0	0	0	0	0
t	0	0	0	0	1744.0	1809.0	9.0	3.0	0.0	0.0	11.0	1.0	3.0	1602.0	2165.0	0	0	0	0
MA0732.1_shift5 (EGR3) 
; oligos_7nt_mkv5_m10 versus MA0732.1 (EGR3); m=9/22; ncol2=15; w=11; offset=-1; strand=D; shift=5; score=0.534413; -----yhmCGCCCMCGCAy
; cor=; Ncor=
a	0	0	0	0	0	337.0	444.0	1031.0	2.0	66.0	0.0	0.0	0.0	1159.0	0.0	39.0	2.0	1262.0	406.0
c	0	0	0	0	0	645.0	485.0	701.0	1855.0	32.0	1856.0	1858.0	1823.0	455.0	1875.0	28.0	1899.0	54.0	600.0
g	0	0	0	0	0	278.0	191.0	10.0	0.0	2158.0	2.0	0.0	7.0	11.0	7.0	2152.0	1.0	168.0	110.0
t	0	0	0	0	0	470.0	540.0	20.0	13.0	36.0	0.0	10.0	80.0	4.0	2.0	26.0	21.0	80.0	549.0
MA1512.1_shift4 (KLF11) 
; oligos_7nt_mkv5_m10 versus MA1512.1 (KLF11); m=10/22; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.528221; ----gcCACGCCCmC----
; cor=; Ncor=
a	0	0	0	0	1882.0	2022.0	650.0	8655.0	0.0	2426.0	11.0	1.0	0.0	4689.0	581.0	0	0	0	0
c	0	0	0	0	2054.0	5549.0	8662.0	1289.0	9142.0	52.0	9161.0	9166.0	8941.0	4226.0	8403.0	0	0	0	0
g	0	0	0	0	3930.0	401.0	156.0	115.0	0.0	8291.0	18.0	20.0	4.0	69.0	358.0	0	0	0	0
t	0	0	0	0	1299.0	1192.0	506.0	27.0	38.0	349.0	23.0	7.0	885.0	761.0	1281.0	0	0	0	0
MA0742.1_shift3 (Klf12) 
; oligos_7nt_mkv5_m10 versus MA0742.1 (Klf12); m=11/22; ncol2=15; w=11; offset=-3; strand=D; shift=3; score=0.523593; ---GrCCACGCCCwthtw-
; cor=; Ncor=
a	0	0	0	167.0	553.0	19.0	5.0	853.0	9.0	215.0	0.0	0.0	0.0	410.0	238.0	308.0	238.0	271.0	0
c	0	0	0	35.0	11.0	668.0	670.0	27.0	675.0	1.0	687.0	706.0	715.0	120.0	219.0	239.0	186.0	210.0	0
g	0	0	0	1158.0	531.0	8.0	12.0	2.0	0.0	1348.0	0.0	9.0	0.0	0.0	99.0	84.0	117.0	141.0	0
t	0	0	0	225.0	0.0	9.0	3.0	0.0	4.0	16.0	4.0	13.0	13.0	483.0	403.0	290.0	429.0	330.0	0
MA0741.1_shift4 (KLF16) 
; oligos_7nt_mkv5_m10 versus MA0741.1 (KLF16); m=12/22; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.513945; ----gmCMCgCCCMC----
; cor=; Ncor=
a	0	0	0	0	666.0	901.0	62.0	1150.0	66.0	497.0	8.0	2.0	16.0	437.0	32.0	0	0	0	0
c	0	0	0	0	535.0	1612.0	1612.0	461.0	1612.0	173.0	1612.0	1612.0	1612.0	1175.0	1612.0	0	0	0	0
g	0	0	0	0	1612.0	77.0	6.0	32.0	17.0	1612.0	0.0	8.0	3.0	19.0	23.0	0	0	0	0
t	0	0	0	0	240.0	116.0	45.0	0.0	19.0	403.0	0.0	0.0	97.0	40.0	370.0	0	0	0	0
MA0733.1_shift5 (EGR4) 
; oligos_7nt_mkv5_m10 versus MA0733.1 (EGR4); m=13/22; ncol2=16; w=11; offset=-1; strand=D; shift=5; score=0.513192; -----yymCGCCCACGCAh
; cor=; Ncor=
a	0	0	0	0	0	1167.0	1143.0	2745.0	101.0	556.0	11.0	120.0	0.0	4500.0	44.0	233.0	10.0	4608.0	1721.0
c	0	0	0	0	0	1459.0	1664.0	1924.0	4466.0	475.0	4447.0	4448.0	4403.0	1055.0	4402.0	1793.0	4354.0	839.0	1399.0
g	0	0	0	0	0	1004.0	527.0	151.0	150.0	7053.0	63.0	107.0	110.0	348.0	114.0	6862.0	183.0	829.0	409.0
t	0	0	0	0	0	1953.0	2131.0	158.0	319.0	707.0	88.0	76.0	131.0	363.0	245.0	253.0	219.0	483.0	1778.0
MA0516.2_shift0 (SP2) 
; oligos_7nt_mkv5_m10 versus MA0516.2 (SP2); m=14/22; ncol2=17; w=11; offset=-6; strand=D; shift=0; score=0.486237; mTAAGyCCCGCCCmCyy--
; cor=; Ncor=
a	256.0	53.0	613.0	753.0	54.0	34.0	14.0	16.0	4.0	82.0	0.0	5.0	23.0	402.0	22.0	109.0	150.0	0	0
c	308.0	171.0	76.0	84.0	127.0	456.0	774.0	786.0	788.0	52.0	795.0	793.0	774.0	390.0	679.0	221.0	203.0	0	0
g	123.0	57.0	0.0	33.0	791.0	8.0	1.0	13.0	22.0	780.0	0.0	26.0	0.0	22.0	1.0	0.0	88.0	0	0
t	106.0	608.0	180.0	67.0	43.0	327.0	0.0	8.0	12.0	45.0	18.0	7.0	27.0	17.0	101.0	503.0	352.0	0	0
MA0599.1_shift4 (KLF5) 
; oligos_7nt_mkv5_m10 versus MA0599.1 (KLF5); m=15/22; ncol2=10; w=8; offset=-2; strand=D; shift=4; score=0.485422; ----gCCMCrCCCh-----
; cor=; Ncor=
a	0	0	0	0	1429.0	0.0	0.0	3477.0	0.0	5051.0	0.0	0.0	0.0	3915.0	0	0	0	0	0
c	0	0	0	0	2023.0	11900.0	12008.0	9569.0	13611.0	0.0	13611.0	13611.0	13135.0	5595.0	0	0	0	0	0
g	0	0	0	0	7572.0	0.0	0.0	0.0	0.0	5182.0	0.0	0.0	0.0	0.0	0	0	0	0	0
t	0	0	0	0	2587.0	1711.0	1603.0	565.0	0.0	3378.0	0.0	0.0	476.0	4101.0	0	0	0	0	0
MA1516.1_shift3 (KLF3) 
; oligos_7nt_mkv5_m10 versus MA1516.1 (KLF3); m=16/22; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.482357; ---grCCrCGCCCw-----
; cor=; Ncor=
a	0	0	0	7717.0	24771.0	1442.0	298.0	26757.0	2261.0	4245.0	202.0	83.0	77.0	17029.0	0	0	0	0	0
c	0	0	0	2655.0	615.0	43259.0	43259.0	707.0	43259.0	334.0	43259.0	43259.0	43259.0	10099.0	0	0	0	0	0
g	0	0	0	26568.0	18489.0	1954.0	248.0	16503.0	21.0	43259.0	31.0	29.0	48.0	1514.0	0	0	0	0	0
t	0	0	0	6319.0	207.0	705.0	335.0	419.0	1409.0	1212.0	0.0	0.0	1218.0	14617.0	0	0	0	0	0
MA0685.1_shift1 (SP4) 
; oligos_7nt_mkv5_m10 versus MA0685.1 (SP4); m=17/22; ncol2=17; w=11; offset=-5; strand=D; shift=1; score=0.480131; -ywrGCCACGCCCmCtyy-
; cor=; Ncor=
a	0	621.0	2173.0	2600.0	939.0	260.0	2.0	3004.0	2.0	10.0	2.0	3.0	0.0	1840.0	113.0	1140.0	582.0	967.0	0
c	0	1405.0	156.0	146.0	6.0	4443.0	4492.0	991.0	4662.0	14.0	4681.0	4732.0	4667.0	2430.0	4276.0	897.0	1206.0	1180.0	0
g	0	823.0	65.0	1639.0	4774.0	0.0	5.0	3.0	0.0	5444.0	4.0	2.0	3.0	9.0	21.0	234.0	363.0	556.0	0
t	0	1622.0	1809.0	199.0	16.0	4.0	135.0	0.0	0.0	55.0	0.0	0.0	72.0	67.0	1067.0	3043.0	2078.0	1509.0	0
MA0079.4_shift1 (SP1) 
; oligos_7nt_mkv5_m10 versus MA0079.4 (SP1); m=18/22; ncol2=15; w=10; offset=-5; strand=D; shift=1; score=0.477511; -ywrRCCACGCCCmCh---
; cor=; Ncor=
a	0	7866.0	28233.0	28895.0	14584.0	962.0	55.0	42154.0	0.0	959.0	0.0	8.0	0.0	24666.0	1195.0	12598.0	0	0	0
c	0	13273.0	1872.0	1530.0	0.0	48854.0	49649.0	12672.0	49660.0	0.0	49666.0	49662.0	48772.0	24196.0	37612.0	15606.0	0	0	0
g	0	9691.0	999.0	19477.0	37543.0	82.0	0.0	0.0	0.0	48957.0	0.0	0.0	0.0	15.0	919.0	3044.0	0	0	0
t	0	18833.0	19877.0	1184.0	153.0	124.0	1670.0	0.0	31.0	867.0	17.0	0.0	1440.0	1373.0	10717.0	18415.0	0	0	0
MA1515.1_shift3 (KLF2) 
; oligos_7nt_mkv5_m10 versus MA1515.1 (KLF2); m=19/22; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.46834; ---srCCmCrCCCw-----
; cor=; Ncor=
a	0	0	0	1054.0	2510.0	741.0	403.0	4622.0	0.0	1702.0	0.0	128.0	68.0	1838.0	0	0	0	0	0
c	0	0	0	1376.0	1103.0	4622.0	4622.0	2265.0	4622.0	274.0	4622.0	4622.0	4622.0	1142.0	0	0	0	0	0
g	0	0	0	1320.0	2112.0	495.0	186.0	1060.0	0.0	2920.0	49.0	195.0	105.0	389.0	0	0	0	0	0
t	0	0	0	872.0	433.0	346.0	312.0	214.0	78.0	167.0	22.0	9.0	444.0	1253.0	0	0	0	0	0
MA1517.1_shift3 (KLF6) 
; oligos_7nt_mkv5_m10 versus MA1517.1 (KLF6); m=20/22; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.446751; ---srcCACRCCCm-----
; cor=; Ncor=
a	0	0	0	443.0	1035.0	569.0	432.0	2192.0	0.0	1024.0	0.0	25.0	71.0	955.0	0	0	0	0	0
c	0	0	0	624.0	490.0	2192.0	2192.0	284.0	2192.0	0.0	2192.0	2192.0	2192.0	665.0	0	0	0	0	0
g	0	0	0	626.0	1157.0	332.0	298.0	60.0	0.0	2192.0	0.0	60.0	12.0	52.0	0	0	0	0	0
t	0	0	0	499.0	136.0	219.0	140.0	60.0	24.0	0.0	0.0	0.0	64.0	520.0	0	0	0	0	0
MA0471.2_rc_shift2 (E2F6_rc) 
; oligos_7nt_mkv5_m10 versus MA0471.2_rc (E2F6_rc); m=21/22; ncol2=13; w=9; offset=-4; strand=R; shift=2; score=0.435821; --syTTCCCGCCyyc----
; cor=; Ncor=
a	0	0	5600.0	4163.0	757.0	268.0	296.0	353.0	813.0	2125.0	205.0	453.0	6897.0	5665.0	5369.0	0	0	0	0
c	0	0	11405.0	12530.0	5021.0	2322.0	31614.0	31973.0	30573.0	693.0	31790.0	29387.0	11562.0	11649.0	12358.0	0	0	0	0
g	0	0	8477.0	7410.0	1595.0	1171.0	834.0	434.0	539.0	26424.0	837.0	1148.0	5102.0	7405.0	8075.0	0	0	0	0
t	0	0	7616.0	8995.0	25725.0	29337.0	354.0	338.0	1173.0	3856.0	266.0	2110.0	9537.0	8379.0	7296.0	0	0	0	0
MA0139.1_rc_shift5 (CTCF_rc) 
; oligos_7nt_mkv5_m10 versus MA0139.1_rc (CTCF_rc); m=22/22; ncol2=19; w=11; offset=-1; strand=R; shift=5; score=0.411364; -----yrsyGCCmyCTrsT
; cor=; Ncor=
a	0	0	0	0	0	59.0	396.0	37.0	17.0	67.0	71.0	8.0	341.0	9.0	3.0	18.0	324.0	11.0	91.0
c	0	0	0	0	0	266.0	73.0	307.0	507.0	5.0	775.0	890.0	504.0	566.0	903.0	32.0	48.0	334.0	65.0
g	0	0	0	0	0	181.0	322.0	482.0	13.0	733.0	8.0	0.0	12.0	3.0	0.0	11.0	433.0	528.0	13.0
t	0	0	0	0	0	402.0	117.0	82.0	372.0	104.0	56.0	12.0	54.0	333.0	5.0	851.0	107.0	40.0	744.0