One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m12/peak-motifs_oligos_7nt_mkv5_m12.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m12/peak-motifs_oligos_7nt_mkv5_m12_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m12_shift1 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv5_m12_shift1 (oligos_7nt_mkv5_m12oligos_7nt_mkv5_m12)     
; oligos_7nt_mkv5_m12 (oligos_7nt_mkv5_m12oligos_7nt_mkv5_m12); m=0 (reference); ncol1=12; shift=1; ncol=14; -ssCGCCTGCGss-
; Alignment reference
a	0	431	472	2	9	71	216	50	80	4	28	357	748	0
c	0	1607	1335	4064	16	3727	3318	704	421	4077	231	2162	1392	0
g	0	1227	1931	35	4078	214	500	480	3502	17	3793	1045	1508	0
t	0	841	368	5	3	94	72	2872	103	8	54	542	458	0
MA0506.1_shift2 (NRF1) 
; oligos_7nt_mkv5_m12 versus MA0506.1 (NRF1); m=1/5; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.832017; --GCGCmTGCGCr-
; cor=; Ncor=
a	0	0	602.0	623.0	196.0	0.0	1514.0	0.0	0.0	0.0	0.0	74.0	2245.0	0
c	0	0	375.0	4001.0	189.0	4016.0	1862.0	403.0	0.0	4338.0	349.0	4550.0	804.0	0
g	0	0	3647.0	0.0	4239.0	468.0	935.0	528.0	4624.0	0.0	4275.0	0.0	1575.0	0
t	0	0	0.0	0.0	0.0	140.0	313.0	3693.0	0.0	286.0	0.0	0.0	0.0	0
MA1648.1_shift1 (TCF12(var.2)) 
; oligos_7nt_mkv5_m12 versus MA1648.1 (TCF12(var.2)); m=2/5; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.668225; -ssCACCTGCys--
; cor=; Ncor=
a	0	13014.0	14835.0	955.0	52529.0	744.0	1913.0	1380.0	2819.0	1089.0	13867.0	11414.0	0	0
c	0	19393.0	17594.0	57848.0	2007.0	55598.0	55765.0	3886.0	2088.0	55061.0	17603.0	18154.0	0	0
g	0	16996.0	18560.0	1186.0	5607.0	3780.0	3536.0	2625.0	55922.0	2314.0	14293.0	20060.0	0	0
t	0	12473.0	10887.0	1887.0	1733.0	1754.0	662.0	53985.0	1047.0	3412.0	16113.0	12248.0	0	0
MA0522.3_shift1 (TCF3) 
; oligos_7nt_mkv5_m12 versus MA0522.3 (TCF3); m=3/5; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.659619; -svCACCTGCss--
; cor=; Ncor=
a	0	6270.0	8032.0	469.0	28916.0	309.0	1127.0	380.0	1089.0	295.0	7276.0	5485.0	0	0
c	0	10212.0	9269.0	29379.0	396.0	28640.0	27199.0	2003.0	1038.0	28742.0	8727.0	10122.0	0	0
g	0	8539.0	9432.0	708.0	1574.0	1362.0	2652.0	1339.0	28642.0	987.0	8025.0	9222.0	0	0
t	0	6240.0	4528.0	705.0	375.0	950.0	283.0	27539.0	492.0	1237.0	7233.0	6432.0	0	0
MA0472.2_shift2 (EGR2) 
; oligos_7nt_mkv5_m12 versus MA0472.2 (EGR2); m=4/5; ncol2=11; w=11; offset=1; strand=D; shift=2; score=0.642242; --mCGCCCACGCa-
; cor=; Ncor=
a	0	0	1157.0	0.0	295.0	6.0	24.0	0.0	2147.0	0.0	106.0	4.0	1731.0	0
c	0	0	679.0	1551.0	0.0	1558.0	1554.0	1468.0	110.0	1573.0	0.0	1585.0	157.0	0
g	0	0	94.0	28.0	3731.0	25.0	15.0	38.0	26.0	2.0	4034.0	20.0	542.0	0
t	0	0	142.0	73.0	222.0	29.0	13.0	277.0	2.0	23.0	171.0	115.0	430.0	0
MA0162.4_shift0 (EGR1) 
; oligos_7nt_mkv5_m12 versus MA0162.4 (EGR1); m=5/5; ncol2=14; w=12; offset=-1; strand=D; shift=0; score=0.60242; ccmCGCCCACgCms
; cor=; Ncor=
a	7087.0	3997.0	14508.0	642.0	5110.0	227.0	1440.0	314.0	22297.0	153.0	4696.0	969.0	8903.0	3809.0
c	11610.0	14749.0	10303.0	28403.0	1131.0	29338.0	27321.0	28958.0	5420.0	29507.0	2806.0	25196.0	10441.0	13686.0
g	6621.0	7211.0	3854.0	756.0	22237.0	665.0	1455.0	698.0	2122.0	699.0	20544.0	2157.0	6345.0	7852.0
t	5280.0	4641.0	1933.0	797.0	2120.0	368.0	382.0	628.0	759.0	239.0	2552.0	2276.0	4909.0	5251.0