One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m13/peak-motifs_oligos_7nt_mkv5_m13.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m13/peak-motifs_oligos_7nt_mkv5_m13_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m13_shift1 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m13_shift1 (oligos_7nt_mkv5_m13oligos_7nt_mkv5_m13)
; oligos_7nt_mkv5_m13 (oligos_7nt_mkv5_m13oligos_7nt_mkv5_m13); m=0 (reference); ncol1=11; shift=1; ncol=14; -ssCCAGGTCms-- ; Alignment reference a 0 298 218 0 0 1491 0 0 0 1 421 175 0 0 c 0 474 452 1556 1528 21 37 0 0 1555 531 552 0 0 g 0 400 527 0 28 44 1519 1556 0 0 236 500 0 0 t 0 384 359 0 0 0 0 0 1556 0 368 329 0 0

MA1540.1_shift1 (NR5A1)
; oligos_7nt_mkv5_m13 versus MA1540.1 (NR5A1); m=1/12; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.718485; -kyCAAGGyCry-- ; cor=; Ncor= a 0 767.0 906.0 84.0 4118.0 4118.0 0.0 0.0 951.0 70.0 4118.0 849.0 0 0 c 0 991.0 1690.0 4118.0 0.0 128.0 0.0 0.0 2021.0 4118.0 242.0 1323.0 0 0 g 0 1268.0 902.0 716.0 287.0 137.0 4118.0 4118.0 381.0 218.0 1684.0 820.0 0 0 t 0 1093.0 2428.0 135.0 4.0 143.0 86.0 0.0 4118.0 651.0 287.0 1126.0 0 0

MA0103.3_rc_shift1 (ZEB1_rc)
; oligos_7nt_mkv5_m13 versus MA0103.3_rc (ZEB1_rc); m=2/12; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.709576; -sssCAGGTGss-- ; cor=; Ncor= a 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 c 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 g 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 t 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0

MA1474.1_shift1 (CREB3L4)
; oligos_7nt_mkv5_m13 versus MA1474.1 (CREB3L4); m=3/12; ncol2=12; w=11; offset=0; strand=D; shift=1; score=0.664917; -ygCCACGTCAyc- ; cor=; Ncor= a 0 876.0 828.0 1118.0 260.0 3891.0 13.0 306.0 53.0 500.0 3891.0 284.0 664.0 0 c 0 1802.0 247.0 3891.0 3891.0 50.0 3891.0 65.0 301.0 3891.0 515.0 2584.0 1740.0 0 g 0 959.0 3891.0 165.0 112.0 208.0 20.0 3891.0 63.0 690.0 769.0 729.0 788.0 0 t 0 2090.0 1403.0 246.0 221.0 8.0 130.0 0.0 3891.0 279.0 275.0 1308.0 698.0 0

MA0071.1_shift1 (RORA)
; oligos_7nt_mkv5_m13 versus MA0071.1 (RORA); m=4/12; ncol2=10; w=10; offset=0; strand=D; shift=1; score=0.646392; -wwcwAGGTCA--- ; cor=; Ncor= a 0 15.0 9.0 6.0 11.0 21.0 0.0 0.0 0.0 0.0 25.0 0 0 0 c 0 1.0 1.0 12.0 2.0 0.0 0.0 0.0 0.0 25.0 0.0 0 0 0 g 0 2.0 0.0 4.0 5.0 4.0 25.0 25.0 0.0 0.0 0.0 0 0 0 t 0 7.0 15.0 3.0 7.0 0.0 0.0 0.0 25.0 0.0 0.0 0 0 0

MA0643.1_shift2 (Esrrg)
; oligos_7nt_mkv5_m13 versus MA0643.1 (Esrrg); m=5/12; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.639623; --tsAAGGTCAw-- ; cor=; Ncor= a 0 0 3489.0 705.0 14909.0 14909.0 12.0 0.0 472.0 7.0 14909.0 4305.0 0 0 c 0 0 5974.0 10009.0 0.0 12.0 7.0 17.0 41.0 14909.0 34.0 3207.0 0 0 g 0 0 2800.0 4901.0 603.0 34.0 14909.0 14909.0 844.0 271.0 1561.0 1181.0 0 0 t 0 0 14909.0 490.0 195.0 5.0 298.0 14.0 14909.0 1280.0 60.0 6216.0 0 0

MA0592.3_shift0 (ESRRA)
; oligos_7nt_mkv5_m13 versus MA0592.3 (ESRRA); m=6/12; ncol2=13; w=11; offset=-1; strand=D; shift=0; score=0.618912; kytCAAGGTCAya- ; cor=; Ncor= a 5231.0 3546.0 2305.0 972.0 24681.0 24744.0 480.0 223.0 1003.0 293.0 24648.0 5535.0 9325.0 0 c 5066.0 8789.0 6446.0 21854.0 355.0 415.0 340.0 146.0 379.0 23989.0 226.0 9140.0 5586.0 0 g 9007.0 6312.0 1850.0 2323.0 556.0 569.0 24676.0 25332.0 949.0 786.0 781.0 4455.0 5892.0 0 t 6691.0 7348.0 15394.0 846.0 403.0 267.0 499.0 294.0 23664.0 927.0 340.0 6865.0 5192.0 0

MA0141.3_shift2 (ESRRB)
; oligos_7nt_mkv5_m13 versus MA0141.3 (ESRRB); m=7/12; ncol2=11; w=10; offset=1; strand=D; shift=2; score=0.588157; --TCAAGGTCAww- ; cor=; Ncor= a 0 0 108.0 9.0 1746.0 1746.0 3.0 1.0 6.0 2.0 1746.0 702.0 692.0 0 c 0 0 373.0 1746.0 1.0 1.0 2.0 4.0 11.0 1746.0 0.0 256.0 328.0 0 g 0 0 75.0 255.0 0.0 3.0 1746.0 1746.0 8.0 1.0 56.0 42.0 189.0 0 t 0 0 1746.0 7.0 4.0 0.0 1.0 3.0 1746.0 15.0 3.0 1045.0 537.0 0

MA1535.1_shift3 (NR2C1)
; oligos_7nt_mkv5_m13 versus MA1535.1 (NR2C1); m=8/12; ncol2=9; w=9; offset=2; strand=D; shift=3; score=0.572822; ---mrrGGTCAy-- ; cor=; Ncor= a 0 0 0 2552.0 4035.0 4866.0 0.0 0.0 0.0 0.0 9622.0 2298.0 0 0 c 0 0 0 2848.0 1225.0 227.0 0.0 0.0 0.0 9622.0 0.0 2786.0 0 0 g 0 0 0 1997.0 5587.0 4756.0 9622.0 9622.0 271.0 321.0 1716.0 2039.0 0 0 t 0 0 0 2225.0 1316.0 55.0 297.0 0.0 9622.0 0.0 0.0 2499.0 0 0

MA0839.1_shift0 (CREB3L1)
; oligos_7nt_mkv5_m13 versus MA0839.1 (CREB3L1); m=9/12; ncol2=14; w=11; offset=-1; strand=D; shift=0; score=0.55565; rTGCCACGTCAyCa ; cor=; Ncor= a 247.0 38.0 20.0 61.0 3.0 671.0 0.0 21.0 7.0 121.0 671.0 60.0 76.0 671.0 c 143.0 159.0 3.0 671.0 671.0 0.0 671.0 3.0 0.0 671.0 33.0 186.0 671.0 65.0 g 181.0 29.0 671.0 0.0 0.0 3.0 3.0 671.0 3.0 40.0 72.0 125.0 64.0 167.0 t 100.0 671.0 18.0 2.0 5.0 0.0 0.0 0.0 671.0 10.0 39.0 300.0 79.0 127.0

MA1536.1_shift4 (NR2C2(var.2))
; oligos_7nt_mkv5_m13 versus MA1536.1 (NR2C2(var.2)); m=10/12; ncol2=8; w=8; offset=3; strand=D; shift=4; score=0.54656; ----rrGGTCRh-- ; cor=; Ncor= a 0 0 0 0 6236.0 10232.0 0.0 0.0 0.0 0.0 18628.0 5065.0 0 0 c 0 0 0 0 3111.0 719.0 236.0 0.0 0.0 18628.0 0.0 4757.0 0 0 g 0 0 0 0 6420.0 8395.0 18628.0 18628.0 1588.0 1643.0 6639.0 3684.0 0 0 t 0 0 0 0 2861.0 0.0 1341.0 4790.0 18628.0 4406.0 0.0 5122.0 0 0

MA0160.1_shift4 (NR4A2)
; oligos_7nt_mkv5_m13 versus MA0160.1 (NR4A2); m=11/12; ncol2=8; w=8; offset=3; strand=D; shift=4; score=0.516773; ----aAGGTCAc-- ; cor=; Ncor= a 0 0 0 0 8.0 13.0 0.0 3.0 2.0 0.0 14.0 3.0 0 0 c 0 0 0 0 1.0 0.0 0.0 0.0 2.0 13.0 0.0 8.0 0 0 g 0 0 0 0 3.0 1.0 13.0 11.0 0.0 0.0 0.0 2.0 0 0 t 0 0 0 0 1.0 0.0 1.0 0.0 10.0 1.0 0.0 0.0 0 0

MA1110.1_rc_shift4 (NR1H4_rc)
; oligos_7nt_mkv5_m13 versus MA1110.1_rc (NR1H4_rc); m=12/12; ncol2=11; w=8; offset=3; strand=R; shift=4; score=0.402758; ----drGGTCATTg ; cor=; Ncor= a 0 0 0 0 134.0 217.0 11.0 11.0 14.0 12.0 481.0 28.0 22.0 110.0 c 0 0 0 0 105.0 81.0 6.0 0.0 14.0 462.0 6.0 36.0 12.0 87.0 g 0 0 0 0 131.0 135.0 476.0 468.0 22.0 7.0 15.0 28.0 10.0 240.0 t 0 0 0 0 135.0 72.0 12.0 26.0 455.0 24.0 3.0 413.0 461.0 68.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m13_shift1 (oligos_7nt_mkv5_m13oligos_7nt_mkv5_m13)				; oligos_7nt_mkv5_m13 (oligos_7nt_mkv5_m13oligos_7nt_mkv5_m13); m=0 (reference); ncol1=11; shift=1; ncol=14; -ssCCAGGTCms-- ; Alignment reference a 0 298 218 0 0 1491 0 0 0 1 421 175 0 0 c 0 474 452 1556 1528 21 37 0 0 1555 531 552 0 0 g 0 400 527 0 28 44 1519 1556 0 0 236 500 0 0 t 0 384 359 0 0 0 0 0 1556 0 368 329 0 0
MA1540.1_shift1 (NR5A1)				; oligos_7nt_mkv5_m13 versus MA1540.1 (NR5A1); m=1/12; ncol2=11; w=11; offset=0; strand=D; shift=1; score=0.718485; -kyCAAGGyCry-- ; cor=; Ncor= a 0 767.0 906.0 84.0 4118.0 4118.0 0.0 0.0 951.0 70.0 4118.0 849.0 0 0 c 0 991.0 1690.0 4118.0 0.0 128.0 0.0 0.0 2021.0 4118.0 242.0 1323.0 0 0 g 0 1268.0 902.0 716.0 287.0 137.0 4118.0 4118.0 381.0 218.0 1684.0 820.0 0 0 t 0 1093.0 2428.0 135.0 4.0 143.0 86.0 0.0 4118.0 651.0 287.0 1126.0 0 0
MA0103.3_rc_shift1 (ZEB1_rc)				; oligos_7nt_mkv5_m13 versus MA0103.3_rc (ZEB1_rc); m=2/12; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.709576; -sssCAGGTGss-- ; cor=; Ncor= a 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 0 c 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 0 g 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 0 t 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0 0
MA1474.1_shift1 (CREB3L4)				; oligos_7nt_mkv5_m13 versus MA1474.1 (CREB3L4); m=3/12; ncol2=12; w=11; offset=0; strand=D; shift=1; score=0.664917; -ygCCACGTCAyc- ; cor=; Ncor= a 0 876.0 828.0 1118.0 260.0 3891.0 13.0 306.0 53.0 500.0 3891.0 284.0 664.0 0 c 0 1802.0 247.0 3891.0 3891.0 50.0 3891.0 65.0 301.0 3891.0 515.0 2584.0 1740.0 0 g 0 959.0 3891.0 165.0 112.0 208.0 20.0 3891.0 63.0 690.0 769.0 729.0 788.0 0 t 0 2090.0 1403.0 246.0 221.0 8.0 130.0 0.0 3891.0 279.0 275.0 1308.0 698.0 0
MA0071.1_shift1 (RORA)				; oligos_7nt_mkv5_m13 versus MA0071.1 (RORA); m=4/12; ncol2=10; w=10; offset=0; strand=D; shift=1; score=0.646392; -wwcwAGGTCA--- ; cor=; Ncor= a 0 15.0 9.0 6.0 11.0 21.0 0.0 0.0 0.0 0.0 25.0 0 0 0 c 0 1.0 1.0 12.0 2.0 0.0 0.0 0.0 0.0 25.0 0.0 0 0 0 g 0 2.0 0.0 4.0 5.0 4.0 25.0 25.0 0.0 0.0 0.0 0 0 0 t 0 7.0 15.0 3.0 7.0 0.0 0.0 0.0 25.0 0.0 0.0 0 0 0
MA0643.1_shift2 (Esrrg)				; oligos_7nt_mkv5_m13 versus MA0643.1 (Esrrg); m=5/12; ncol2=10; w=10; offset=1; strand=D; shift=2; score=0.639623; --tsAAGGTCAw-- ; cor=; Ncor= a 0 0 3489.0 705.0 14909.0 14909.0 12.0 0.0 472.0 7.0 14909.0 4305.0 0 0 c 0 0 5974.0 10009.0 0.0 12.0 7.0 17.0 41.0 14909.0 34.0 3207.0 0 0 g 0 0 2800.0 4901.0 603.0 34.0 14909.0 14909.0 844.0 271.0 1561.0 1181.0 0 0 t 0 0 14909.0 490.0 195.0 5.0 298.0 14.0 14909.0 1280.0 60.0 6216.0 0 0
MA0592.3_shift0 (ESRRA)				; oligos_7nt_mkv5_m13 versus MA0592.3 (ESRRA); m=6/12; ncol2=13; w=11; offset=-1; strand=D; shift=0; score=0.618912; kytCAAGGTCAya- ; cor=; Ncor= a 5231.0 3546.0 2305.0 972.0 24681.0 24744.0 480.0 223.0 1003.0 293.0 24648.0 5535.0 9325.0 0 c 5066.0 8789.0 6446.0 21854.0 355.0 415.0 340.0 146.0 379.0 23989.0 226.0 9140.0 5586.0 0 g 9007.0 6312.0 1850.0 2323.0 556.0 569.0 24676.0 25332.0 949.0 786.0 781.0 4455.0 5892.0 0 t 6691.0 7348.0 15394.0 846.0 403.0 267.0 499.0 294.0 23664.0 927.0 340.0 6865.0 5192.0 0
MA0141.3_shift2 (ESRRB)				; oligos_7nt_mkv5_m13 versus MA0141.3 (ESRRB); m=7/12; ncol2=11; w=10; offset=1; strand=D; shift=2; score=0.588157; --TCAAGGTCAww- ; cor=; Ncor= a 0 0 108.0 9.0 1746.0 1746.0 3.0 1.0 6.0 2.0 1746.0 702.0 692.0 0 c 0 0 373.0 1746.0 1.0 1.0 2.0 4.0 11.0 1746.0 0.0 256.0 328.0 0 g 0 0 75.0 255.0 0.0 3.0 1746.0 1746.0 8.0 1.0 56.0 42.0 189.0 0 t 0 0 1746.0 7.0 4.0 0.0 1.0 3.0 1746.0 15.0 3.0 1045.0 537.0 0
MA1535.1_shift3 (NR2C1)				; oligos_7nt_mkv5_m13 versus MA1535.1 (NR2C1); m=8/12; ncol2=9; w=9; offset=2; strand=D; shift=3; score=0.572822; ---mrrGGTCAy-- ; cor=; Ncor= a 0 0 0 2552.0 4035.0 4866.0 0.0 0.0 0.0 0.0 9622.0 2298.0 0 0 c 0 0 0 2848.0 1225.0 227.0 0.0 0.0 0.0 9622.0 0.0 2786.0 0 0 g 0 0 0 1997.0 5587.0 4756.0 9622.0 9622.0 271.0 321.0 1716.0 2039.0 0 0 t 0 0 0 2225.0 1316.0 55.0 297.0 0.0 9622.0 0.0 0.0 2499.0 0 0
MA0839.1_shift0 (CREB3L1)				; oligos_7nt_mkv5_m13 versus MA0839.1 (CREB3L1); m=9/12; ncol2=14; w=11; offset=-1; strand=D; shift=0; score=0.55565; rTGCCACGTCAyCa ; cor=; Ncor= a 247.0 38.0 20.0 61.0 3.0 671.0 0.0 21.0 7.0 121.0 671.0 60.0 76.0 671.0 c 143.0 159.0 3.0 671.0 671.0 0.0 671.0 3.0 0.0 671.0 33.0 186.0 671.0 65.0 g 181.0 29.0 671.0 0.0 0.0 3.0 3.0 671.0 3.0 40.0 72.0 125.0 64.0 167.0 t 100.0 671.0 18.0 2.0 5.0 0.0 0.0 0.0 671.0 10.0 39.0 300.0 79.0 127.0
MA1536.1_shift4 (NR2C2(var.2))				; oligos_7nt_mkv5_m13 versus MA1536.1 (NR2C2(var.2)); m=10/12; ncol2=8; w=8; offset=3; strand=D; shift=4; score=0.54656; ----rrGGTCRh-- ; cor=; Ncor= a 0 0 0 0 6236.0 10232.0 0.0 0.0 0.0 0.0 18628.0 5065.0 0 0 c 0 0 0 0 3111.0 719.0 236.0 0.0 0.0 18628.0 0.0 4757.0 0 0 g 0 0 0 0 6420.0 8395.0 18628.0 18628.0 1588.0 1643.0 6639.0 3684.0 0 0 t 0 0 0 0 2861.0 0.0 1341.0 4790.0 18628.0 4406.0 0.0 5122.0 0 0
MA0160.1_shift4 (NR4A2)				; oligos_7nt_mkv5_m13 versus MA0160.1 (NR4A2); m=11/12; ncol2=8; w=8; offset=3; strand=D; shift=4; score=0.516773; ----aAGGTCAc-- ; cor=; Ncor= a 0 0 0 0 8.0 13.0 0.0 3.0 2.0 0.0 14.0 3.0 0 0 c 0 0 0 0 1.0 0.0 0.0 0.0 2.0 13.0 0.0 8.0 0 0 g 0 0 0 0 3.0 1.0 13.0 11.0 0.0 0.0 0.0 2.0 0 0 t 0 0 0 0 1.0 0.0 1.0 0.0 10.0 1.0 0.0 0.0 0 0
MA1110.1_rc_shift4 (NR1H4_rc)				; oligos_7nt_mkv5_m13 versus MA1110.1_rc (NR1H4_rc); m=12/12; ncol2=11; w=8; offset=3; strand=R; shift=4; score=0.402758; ----drGGTCATTg ; cor=; Ncor= a 0 0 0 0 134.0 217.0 11.0 11.0 14.0 12.0 481.0 28.0 22.0 110.0 c 0 0 0 0 105.0 81.0 6.0 0.0 14.0 462.0 6.0 36.0 12.0 87.0 g 0 0 0 0 131.0 135.0 476.0 468.0 22.0 7.0 15.0 28.0 10.0 240.0 t 0 0 0 0 135.0 72.0 12.0 26.0 455.0 24.0 3.0 413.0 461.0 68.0