One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m14/peak-motifs_oligos_7nt_mkv5_m14.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m14/peak-motifs_oligos_7nt_mkv5_m14_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m14_shift4 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv5_m14_shift4 (oligos_7nt_mkv5_m14oligos_7nt_mkv5_m14)     
; oligos_7nt_mkv5_m14 (oligos_7nt_mkv5_m14oligos_7nt_mkv5_m14); m=0 (reference); ncol1=11; shift=4; ncol=16; ----ggAAGCTGAsv-
; Alignment reference
a	0	0	0	0	341	362	1475	1471	5	17	0	22	1478	270	391	0
c	0	0	0	0	351	369	0	7	4	1455	23	2	0	391	384	0
g	0	0	0	0	532	529	0	0	1456	4	25	1448	0	570	413	0
t	0	0	0	0	254	218	3	0	13	2	1430	6	0	247	290	0
MA1118.1_shift4 (SIX1) 
; oligos_7nt_mkv5_m14 versus MA1118.1 (SIX1); m=1/5; ncol2=11; w=11; offset=0; strand=D; shift=4; score=0.751161; ----GwAACCTGAkm-
; cor=; Ncor=
a	0	0	0	0	96.0	400.0	1049.0	1076.0	43.0	112.0	51.0	48.0	1070.0	146.0	546.0	0
c	0	0	0	0	43.0	77.0	18.0	8.0	959.0	871.0	46.0	9.0	7.0	179.0	360.0	0
g	0	0	0	0	859.0	90.0	6.0	10.0	12.0	31.0	30.0	1025.0	11.0	289.0	73.0	0
t	0	0	0	0	110.0	541.0	35.0	14.0	94.0	94.0	981.0	26.0	20.0	494.0	129.0	0
MA0117.2_shift3 (Mafb) 
; oligos_7nt_mkv5_m14 versus MA0117.2 (Mafb); m=2/5; ncol2=12; w=11; offset=-1; strand=D; shift=3; score=0.649438; ---awwwTGCTGACd-
; cor=; Ncor=
a	0	0	0	1237.0	1263.0	1080.0	744.0	264.0	2.0	295.0	31.0	45.0	2182.0	182.0	582.0	0
c	0	0	0	174.0	121.0	216.0	398.0	618.0	14.0	2182.0	36.0	13.0	13.0	2182.0	138.0	0
g	0	0	0	326.0	159.0	182.0	429.0	31.0	2182.0	5.0	2.0	2182.0	17.0	490.0	646.0	0
t	0	0	0	446.0	639.0	704.0	611.0	2182.0	5.0	7.0	2182.0	170.0	13.0	273.0	816.0	0
MA1119.1_shift0 (SIX2) 
; oligos_7nt_mkv5_m14 versus MA1119.1 (SIX2); m=3/5; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.499898; wwcTGaAACCTGAtmy
; cor=; Ncor=
a	1673.0	1607.0	963.0	840.0	165.0	3578.0	4885.0	5275.0	190.0	586.0	325.0	321.0	5202.0	553.0	2415.0	858.0
c	1234.0	1242.0	2910.0	215.0	56.0	319.0	264.0	39.0	4367.0	4169.0	295.0	114.0	75.0	615.0	1812.0	2523.0
g	1145.0	1226.0	828.0	561.0	5065.0	273.0	66.0	74.0	170.0	196.0	175.0	4830.0	85.0	1193.0	563.0	511.0
t	1401.0	1378.0	752.0	3837.0	167.0	1283.0	238.0	65.0	726.0	502.0	4658.0	188.0	91.0	3092.0	663.0	1561.0
MA0164.1_shift5 (Nr2e3) 
; oligos_7nt_mkv5_m14 versus MA0164.1 (Nr2e3); m=4/5; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.484792; -----cAAGCTT----
; cor=; Ncor=
a	0	0	0	0	0	4.0	23.0	23.0	0.0	0.0	0.0	0.0	0	0	0	0
c	0	0	0	0	0	12.0	0.0	0.0	1.0	23.0	0.0	0.0	0	0	0	0
g	0	0	0	0	0	2.0	0.0	0.0	22.0	0.0	0.0	0.0	0	0	0	0
t	0	0	0	0	0	5.0	0.0	0.0	0.0	0.0	23.0	23.0	0	0	0	0
MA0496.3_rc_shift5 (MAFK_rc) 
; oligos_7nt_mkv5_m14 versus MA0496.3_rc (MAFK_rc); m=5/5; ncol2=15; w=10; offset=1; strand=R; shift=5; score=0.439181; -----wwkGCTGAGTC
; cor=; Ncor=
a	0	0	0	0	0	18619.0	14552.0	8204.0	2285.0	4361.0	1910.0	1087.0	46798.0	2544.0	1274.0	2565.0
c	0	0	0	0	0	8541.0	10512.0	4590.0	3327.0	44013.0	1267.0	957.0	1081.0	7573.0	1306.0	46695.0
g	0	0	0	0	0	9756.0	10737.0	14138.0	43458.0	1921.0	882.0	47872.0	1133.0	39125.0	1670.0	1366.0
t	0	0	0	0	0	14818.0	15933.0	24802.0	2664.0	1439.0	47675.0	1818.0	2722.0	2492.0	47484.0	1108.0