One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m16/peak-motifs_oligos_7nt_mkv5_m16.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m16/peak-motifs_oligos_7nt_mkv5_m16_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m16_shift2 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv5_m16_shift2 (oligos_7nt_mkv5_m16oligos_7nt_mkv5_m16)     
; oligos_7nt_mkv5_m16 (oligos_7nt_mkv5_m16oligos_7nt_mkv5_m16); m=0 (reference); ncol1=11; shift=2; ncol=16; --ssCACAGCChs---
; Alignment reference
a	0	0	984	827	0	4252	0	4243	0	0	0	1354	746	0	0	0
c	0	0	1308	1660	4248	0	4248	4	0	4252	4252	1208	1294	0	0	0
g	0	0	1222	1086	0	0	0	5	4252	0	0	462	1322	0	0	0
t	0	0	738	679	4	0	4	0	0	0	0	1228	890	0	0	0
MA1511.1_shift2 (KLF10) 
; oligos_7nt_mkv5_m16 versus MA1511.1 (KLF10); m=1/5; ncol2=11; w=11; offset=0; strand=D; shift=2; score=0.725953; --gmCACrCCCmy---
; cor=; Ncor=
a	0	0	4746.0	6633.0	633.0	18751.0	238.0	13506.0	1.0	0.0	0.0	7545.0	934.0	0	0	0
c	0	0	2435.0	12654.0	19619.0	1663.0	19907.0	11.0	19995.0	19994.0	19244.0	11403.0	13118.0	0	0	0
g	0	0	14086.0	1299.0	98.0	1723.0	3.0	6234.0	2.0	0.0	0.0	587.0	770.0	0	0	0
t	0	0	1251.0	1373.0	485.0	6.0	157.0	543.0	0.0	0.0	2198.0	2686.0	6274.0	0	0	0
MA1655.1_shift1 (ZNF341) 
; oligos_7nt_mkv5_m16 versus MA1655.1 (ZNF341); m=2/5; ncol2=12; w=11; offset=-1; strand=D; shift=1; score=0.69073; -grGAACAGCcas---
; cor=; Ncor=
a	0	4266.0	5117.0	1504.0	17074.0	17700.0	301.0	17627.0	168.0	227.0	3082.0	5305.0	3756.0	0	0	0
c	0	4256.0	2180.0	2043.0	955.0	211.0	16813.0	399.0	359.0	18003.0	10946.0	4431.0	5745.0	0	0	0
g	0	5798.0	8832.0	13739.0	513.0	576.0	1033.0	468.0	17972.0	270.0	2289.0	4672.0	5691.0	0	0	0
t	0	4408.0	2599.0	1442.0	186.0	241.0	581.0	234.0	229.0	228.0	2411.0	4320.0	3536.0	0	0	0
MA0493.1_shift1 (Klf1) 
; oligos_7nt_mkv5_m16 versus MA0493.1 (Klf1); m=3/5; ncol2=11; w=10; offset=-1; strand=D; shift=1; score=0.614915; -rrCCACACCCw----
; cor=; Ncor=
a	0	150.0	167.0	67.0	13.0	404.0	0.0	400.0	0.0	0.0	0.0	280.0	0	0	0	0
c	0	76.0	40.0	396.0	461.0	118.0	526.0	0.0	526.0	526.0	508.0	35.0	0	0	0	0
g	0	202.0	305.0	32.0	0.0	0.0	0.0	97.0	0.0	0.0	0.0	0.0	0	0	0	0
t	0	98.0	14.0	31.0	52.0	4.0	0.0	29.0	0.0	0.0	18.0	211.0	0	0	0	0
MA0002.2_rc_shift0 (RUNX1_rc) 
; oligos_7nt_mkv5_m16 versus MA0002.2_rc (RUNX1_rc); m=4/5; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=0.513724; waaCCACAram-----
; cor=; Ncor=
a	1053.0	1325.0	1339.0	93.0	13.0	1716.0	53.0	1936.0	656.0	814.0	521.0	0	0	0	0	0
c	289.0	81.0	251.0	1848.0	1987.0	70.0	1872.0	7.0	149.0	467.0	696.0	0	0	0	0	0
g	158.0	463.0	400.0	42.0	0.0	127.0	75.0	0.0	1072.0	485.0	496.0	0	0	0	0	0
t	500.0	131.0	10.0	17.0	0.0	87.0	0.0	57.0	123.0	234.0	287.0	0	0	0	0	0
MA1107.2_shift0 (KLF9) 
; oligos_7nt_mkv5_m16 versus MA1107.2 (KLF9); m=5/5; ncol2=16; w=11; offset=-2; strand=D; shift=0; score=0.49846; crgCCACACCCAChyc
; cor=; Ncor=
a	5359.0	8015.0	2862.0	4664.0	287.0	21899.0	221.0	19187.0	224.0	2428.0	146.0	18837.0	792.0	6948.0	4110.0	5875.0
c	10412.0	5108.0	4342.0	17839.0	24709.0	2559.0	24863.0	1070.0	24365.0	22117.0	24682.0	4339.0	20644.0	8797.0	10520.0	9519.0
g	5200.0	7779.0	16852.0	1660.0	291.0	708.0	353.0	4340.0	735.0	605.0	205.0	852.0	1778.0	3289.0	4423.0	5681.0
t	4608.0	4677.0	1523.0	1416.0	292.0	413.0	142.0	982.0	255.0	429.0	546.0	1551.0	2365.0	6545.0	6526.0	4504.0