Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18.tf
		file1	1	12	4325
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m18 MA0472.2 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 EGR2 0.904 0.829 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m18 MA0162.4 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 EGR1 0.945 0.810 12 14 12 14 0.8571 1.0000 0.8571 D -1
oligos_7nt_mkv5_m18 MA0732.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 EGR3 0.876 0.700 12 15 12 15 0.8000 1.0000 0.8000 D -1
oligos_7nt_mkv5_m18 MA1650.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 ZBTB14 0.796 0.674 12 12 11 13 0.8462 0.9167 0.9167 D -1
oligos_7nt_mkv5_m18 MA0733.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 EGR4 0.884 0.663 12 16 12 16 0.7500 1.0000 0.7500 D -1
oligos_7nt_mkv5_m18 MA1564.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 SP9 0.808 0.577 12 12 10 14 0.7143 0.8333 0.8333 D -2
oligos_7nt_mkv5_m18 MA0740.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 KLF14 0.753 0.552 12 14 11 15 0.7333 0.9167 0.7857 D -3
oligos_7nt_mkv5_m18 MA1512.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 KLF11 0.852 0.548 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv5_m18 MA0685.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 SP4 0.772 0.545 12 17 12 17 0.7059 1.0000 0.7059 D -5
oligos_7nt_mkv5_m18 MA0747.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 SP8 0.762 0.544 12 12 10 14 0.7143 0.8333 0.8333 D -2
oligos_7nt_mkv5_m18 MA0746.2 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 SP3 0.795 0.530 12 13 10 15 0.6667 0.8333 0.7692 D -3
oligos_7nt_mkv5_m18 MA0741.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 KLF16 0.812 0.522 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv5_m18 MA1513.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 KLF15 0.810 0.520 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv5_m18 MA0516.2 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 SP2 0.786 0.481 12 17 11 18 0.6111 0.9167 0.6471 D -6
oligos_7nt_mkv5_m18 MA0079.4 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 SP1 0.806 0.474 12 15 10 17 0.5882 0.8333 0.6667 D -5
oligos_7nt_mkv5_m18 MA1516.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 KLF3 0.870 0.464 12 11 8 15 0.5333 0.6667 0.7273 D -3
oligos_7nt_mkv5_m18 MA1515.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 KLF2 0.866 0.462 12 11 8 15 0.5333 0.6667 0.7273 D -3
oligos_7nt_mkv5_m18 MA0599.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 KLF5 0.806 0.461 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_7nt_mkv5_m18 MA1511.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 KLF10 0.715 0.460 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv5_m18 MA0006.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 Ahr::Arnt 0.903 0.452 12 6 6 12 0.5000 0.5000 1.0000 R 6
oligos_7nt_mkv5_m18 MA1517.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 KLF6 0.845 0.451 12 11 8 15 0.5333 0.6667 0.7273 D -3
oligos_7nt_mkv5_m18 MA0259.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 ARNT::HIF1A 0.794 0.428 12 8 7 13 0.5385 0.5833 0.8750 R 5
oligos_7nt_mkv5_m18 MA1099.2 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 HES1 0.731 0.417 12 10 8 14 0.5714 0.6667 0.8000 R 4
oligos_7nt_mkv5_m18 MA0004.1 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 Arnt 0.815 0.407 12 6 6 12 0.5000 0.5000 1.0000 R 6
oligos_7nt_mkv5_m18 MA0471.2 oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18 E2F6 0.715 0.402 12 13 9 16 0.5625 0.7500 0.6923 R -4 
 Host name	pedagogix
 Job started	2020-04-14.154853
 Job done	2020-04-14.154921
 Seconds	4.16
	user	4.16
	system	0.51
	cuser	21.55
;	csystem	1.42