One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m18/peak-motifs_oligos_7nt_mkv5_m18_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m18_shift6 ; 26 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m18_shift6 (oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18)
; oligos_7nt_mkv5_m18 (oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18); m=0 (reference); ncol1=12; shift=6; ncol=18; ------ssCGCCCACGss ; Alignment reference a 0 0 0 0 0 0 544 716 30 38 91 143 50 3094 10 303 536 621 c 0 0 0 0 0 0 1920 1788 4179 63 3866 3691 4051 377 4274 474 1925 1643 g 0 0 0 0 0 0 1243 1360 94 4178 275 422 144 704 20 3293 1084 1444 t 0 0 0 0 0 0 618 461 22 46 93 69 80 150 21 255 780 617

MA0472.2_shift7 (EGR2)
; oligos_7nt_mkv5_m18 versus MA0472.2 (EGR2); m=1/25; ncol2=11; w=11; offset=1; strand=D; shift=7; score=0.828914; -------mCGCCCACGCa ; cor=; Ncor= a 0 0 0 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 c 0 0 0 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 g 0 0 0 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 t 0 0 0 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0

MA0162.4_shift5 (EGR1)
; oligos_7nt_mkv5_m18 versus MA0162.4 (EGR1); m=2/25; ncol2=14; w=12; offset=-1; strand=D; shift=5; score=0.81019; -----ccmCGCCCACgCm ; cor=; Ncor= a 0 0 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 c 0 0 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 g 0 0 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 t 0 0 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0

MA0732.1_shift5 (EGR3)
; oligos_7nt_mkv5_m18 versus MA0732.1 (EGR3); m=3/25; ncol2=15; w=12; offset=-1; strand=D; shift=5; score=0.700401; -----yhmCGCCCMCGCA ; cor=; Ncor= a 0 0 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 c 0 0 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 g 0 0 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 t 0 0 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0

MA1650.1_shift5 (ZBTB14)
; oligos_7nt_mkv5_m18 versus MA1650.1 (ZBTB14); m=4/25; ncol2=12; w=11; offset=-1; strand=D; shift=5; score=0.673895; -----ssCCGCGCACss- ; cor=; Ncor= a 0 0 0 0 0 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 c 0 0 0 0 0 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 g 0 0 0 0 0 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 t 0 0 0 0 0 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0

MA0733.1_shift5 (EGR4)
; oligos_7nt_mkv5_m18 versus MA0733.1 (EGR4); m=5/25; ncol2=16; w=12; offset=-1; strand=D; shift=5; score=0.662817; -----yymCGCCCACGCA ; cor=; Ncor= a 0 0 0 0 0 1167.0 1143.0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 c 0 0 0 0 0 1459.0 1664.0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 g 0 0 0 0 0 1004.0 527.0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 t 0 0 0 0 0 1953.0 2131.0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0

MA1564.1_shift4 (SP9)
; oligos_7nt_mkv5_m18 versus MA1564.1 (SP9); m=6/25; ncol2=12; w=10; offset=-2; strand=D; shift=4; score=0.577038; ----rcCmCGCCCmcy-- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0

MA0740.1_shift3 (KLF14)
; oligos_7nt_mkv5_m18 versus MA0740.1 (KLF14); m=7/25; ncol2=14; w=11; offset=-3; strand=D; shift=3; score=0.552411; ---krcCACGCCCmYyt- ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0 0

MA1512.1_shift4 (KLF11)
; oligos_7nt_mkv5_m18 versus MA1512.1 (KLF11); m=8/25; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.547973; ----gcCACGCCCmC--- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0

MA0685.1_shift1 (SP4)
; oligos_7nt_mkv5_m18 versus MA0685.1 (SP4); m=9/25; ncol2=17; w=12; offset=-5; strand=D; shift=1; score=0.544966; -ywrGCCACGCCCmCtyy ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 967.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 1180.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 556.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0 1509.0

MA0747.1_shift4 (SP8)
; oligos_7nt_mkv5_m18 versus MA0747.1 (SP8); m=10/25; ncol2=12; w=10; offset=-2; strand=D; shift=4; score=0.54397; ----rmCACgCCCmCy-- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0

MA0746.2_shift3 (SP3)
; oligos_7nt_mkv5_m18 versus MA0746.2 (SP3); m=11/25; ncol2=13; w=10; offset=-3; strand=D; shift=3; score=0.529674; ---srCCACGCCCmCy-- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0 0

MA0741.1_shift4 (KLF16)
; oligos_7nt_mkv5_m18 versus MA0741.1 (KLF16); m=12/25; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.521697; ----gmCMCgCCCMC--- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0

MA1513.1_shift4 (KLF15)
; oligos_7nt_mkv5_m18 versus MA1513.1 (KLF15); m=13/25; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.520451; ----scCCCGCCCcs--- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0

MA0516.2_shift0 (SP2)
; oligos_7nt_mkv5_m18 versus MA0516.2 (SP2); m=14/25; ncol2=17; w=11; offset=-6; strand=D; shift=0; score=0.480588; mTAAGyCCCGCCCmCyy- ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0 0

MA0079.4_shift1 (SP1)
; oligos_7nt_mkv5_m18 versus MA0079.4 (SP1); m=15/25; ncol2=15; w=10; offset=-5; strand=D; shift=1; score=0.474044; -ywrRCCACGCCCmCh-- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0 0

MA1516.1_shift3 (KLF3)
; oligos_7nt_mkv5_m18 versus MA1516.1 (KLF3); m=16/25; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.463918; ---grCCrCGCCCw---- ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0 0

MA1515.1_shift3 (KLF2)
; oligos_7nt_mkv5_m18 versus MA1515.1 (KLF2); m=17/25; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.461916; ---srCCmCrCCCw---- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0

MA0599.1_shift4 (KLF5)
; oligos_7nt_mkv5_m18 versus MA0599.1 (KLF5); m=18/25; ncol2=10; w=8; offset=-2; strand=D; shift=4; score=0.460699; ----gCCMCrCCCh---- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0

MA1511.1_shift4 (KLF10)
; oligos_7nt_mkv5_m18 versus MA1511.1 (KLF10); m=19/25; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.459932; ----gmCACrCCCmy--- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0

MA0006.1_rc_shift12 (Ahr::Arnt_rc)
; oligos_7nt_mkv5_m18 versus MA0006.1_rc (Ahr::Arnt_rc); m=20/25; ncol2=6; w=6; offset=6; strand=R; shift=12; score=0.451663; ------------CACGCr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 c 0 0 0 0 0 0 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 g 0 0 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 t 0 0 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0

MA1517.1_shift3 (KLF6)
; oligos_7nt_mkv5_m18 versus MA1517.1 (KLF6); m=21/25; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.450745; ---srcCACRCCCm---- ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0

MA0259.1_rc_shift11 (ARNT::HIF1A_rc)
; oligos_7nt_mkv5_m18 versus MA0259.1_rc (ARNT::HIF1A_rc); m=22/25; ncol2=8; w=7; offset=5; strand=R; shift=11; score=0.427511; -----------gCACGTv ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 15.0 0.0 104.0 0.0 1.0 1.0 31.0 c 0 0 0 0 0 0 0 0 0 0 0 20.0 104.0 0.0 104.0 0.0 23.0 34.0 g 0 0 0 0 0 0 0 0 0 0 0 51.0 0.0 0.0 0.0 103.0 2.0 29.0 t 0 0 0 0 0 0 0 0 0 0 0 18.0 0.0 0.0 0.0 0.0 78.0 10.0

MA1099.2_rc_shift10 (HES1_rc)
; oligos_7nt_mkv5_m18 versus MA1099.2_rc (HES1_rc); m=23/25; ncol2=10; w=8; offset=4; strand=R; shift=10; score=0.417488; ----------gvCACGyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 3216.0 4837.0 53.0 18526.0 0.0 791.0 232.0 18.0 c 0 0 0 0 0 0 0 0 0 0 6013.0 6360.0 18526.0 0.0 18526.0 0.0 9081.0 0.0 g 0 0 0 0 0 0 0 0 0 0 12513.0 6203.0 0.0 4057.0 0.0 18526.0 0.0 18526.0 t 0 0 0 0 0 0 0 0 0 0 2742.0 1126.0 1.0 253.0 21.0 0.0 9446.0 464.0

MA0004.1_rc_shift12 (Arnt_rc)
; oligos_7nt_mkv5_m18 versus MA0004.1_rc (Arnt_rc); m=24/25; ncol2=6; w=6; offset=6; strand=R; shift=12; score=0.407348; ------------CACGTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0.0 20.0 0.0 0.0 0.0 0.0 c 0 0 0 0 0 0 0 0 0 0 0 0 20.0 0.0 20.0 0.0 1.0 0.0 g 0 0 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 20.0 0.0 16.0 t 0 0 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 19.0 4.0

MA0471.2_rc_shift2 (E2F6_rc)
; oligos_7nt_mkv5_m18 versus MA0471.2_rc (E2F6_rc); m=25/25; ncol2=13; w=9; offset=-4; strand=R; shift=2; score=0.402033; --syTTCCCGCCyyc--- ; cor=; Ncor= a 0 0 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 0 0 c 0 0 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 0 0 g 0 0 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 0 0 t 0 0 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m18_shift6 (oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18)				; oligos_7nt_mkv5_m18 (oligos_7nt_mkv5_m18oligos_7nt_mkv5_m18); m=0 (reference); ncol1=12; shift=6; ncol=18; ------ssCGCCCACGss ; Alignment reference a 0 0 0 0 0 0 544 716 30 38 91 143 50 3094 10 303 536 621 c 0 0 0 0 0 0 1920 1788 4179 63 3866 3691 4051 377 4274 474 1925 1643 g 0 0 0 0 0 0 1243 1360 94 4178 275 422 144 704 20 3293 1084 1444 t 0 0 0 0 0 0 618 461 22 46 93 69 80 150 21 255 780 617
MA0472.2_shift7 (EGR2)				; oligos_7nt_mkv5_m18 versus MA0472.2 (EGR2); m=1/25; ncol2=11; w=11; offset=1; strand=D; shift=7; score=0.828914; -------mCGCCCACGCa ; cor=; Ncor= a 0 0 0 0 0 0 0 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 c 0 0 0 0 0 0 0 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 g 0 0 0 0 0 0 0 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 t 0 0 0 0 0 0 0 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0
MA0162.4_shift5 (EGR1)				; oligos_7nt_mkv5_m18 versus MA0162.4 (EGR1); m=2/25; ncol2=14; w=12; offset=-1; strand=D; shift=5; score=0.81019; -----ccmCGCCCACgCm ; cor=; Ncor= a 0 0 0 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 c 0 0 0 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 g 0 0 0 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 t 0 0 0 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0
MA0732.1_shift5 (EGR3)				; oligos_7nt_mkv5_m18 versus MA0732.1 (EGR3); m=3/25; ncol2=15; w=12; offset=-1; strand=D; shift=5; score=0.700401; -----yhmCGCCCMCGCA ; cor=; Ncor= a 0 0 0 0 0 337.0 444.0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 c 0 0 0 0 0 645.0 485.0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 g 0 0 0 0 0 278.0 191.0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 t 0 0 0 0 0 470.0 540.0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0
MA1650.1_shift5 (ZBTB14)				; oligos_7nt_mkv5_m18 versus MA1650.1 (ZBTB14); m=4/25; ncol2=12; w=11; offset=-1; strand=D; shift=5; score=0.673895; -----ssCCGCGCACss- ; cor=; Ncor= a 0 0 0 0 0 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 c 0 0 0 0 0 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 g 0 0 0 0 0 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 t 0 0 0 0 0 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0
MA0733.1_shift5 (EGR4)				; oligos_7nt_mkv5_m18 versus MA0733.1 (EGR4); m=5/25; ncol2=16; w=12; offset=-1; strand=D; shift=5; score=0.662817; -----yymCGCCCACGCA ; cor=; Ncor= a 0 0 0 0 0 1167.0 1143.0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 c 0 0 0 0 0 1459.0 1664.0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 g 0 0 0 0 0 1004.0 527.0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 t 0 0 0 0 0 1953.0 2131.0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0
MA1564.1_shift4 (SP9)				; oligos_7nt_mkv5_m18 versus MA1564.1 (SP9); m=6/25; ncol2=12; w=10; offset=-2; strand=D; shift=4; score=0.577038; ----rcCmCGCCCmcy-- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0 0
MA0740.1_shift3 (KLF14)				; oligos_7nt_mkv5_m18 versus MA0740.1 (KLF14); m=7/25; ncol2=14; w=11; offset=-3; strand=D; shift=3; score=0.552411; ---krcCACGCCCmYyt- ; cor=; Ncor= a 0 0 0 430.0 1205.0 526.0 0.0 1708.0 2.0 69.0 0.0 0.0 0.0 716.0 32.0 280.0 649.0 0 c 0 0 0 215.0 73.0 1360.0 1599.0 136.0 1596.0 36.0 1602.0 1604.0 1609.0 961.0 1463.0 594.0 741.0 0 g 0 0 0 966.0 2280.0 96.0 10.0 58.0 0.0 2939.0 3.0 3.0 4.0 1.0 15.0 89.0 314.0 0 t 0 0 0 693.0 71.0 404.0 248.0 5.0 2.0 31.0 0.0 6.0 65.0 31.0 559.0 1041.0 1670.0 0
MA1512.1_shift4 (KLF11)				; oligos_7nt_mkv5_m18 versus MA1512.1 (KLF11); m=8/25; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.547973; ----gcCACGCCCmC--- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0
MA0685.1_shift1 (SP4)				; oligos_7nt_mkv5_m18 versus MA0685.1 (SP4); m=9/25; ncol2=17; w=12; offset=-5; strand=D; shift=1; score=0.544966; -ywrGCCACGCCCmCtyy ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 967.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 1180.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 556.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0 1509.0
MA0747.1_shift4 (SP8)				; oligos_7nt_mkv5_m18 versus MA0747.1 (SP8); m=10/25; ncol2=12; w=10; offset=-2; strand=D; shift=4; score=0.54397; ----rmCACgCCCmCy-- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0 0
MA0746.2_shift3 (SP3)				; oligos_7nt_mkv5_m18 versus MA0746.2 (SP3); m=11/25; ncol2=13; w=10; offset=-3; strand=D; shift=3; score=0.529674; ---srCCACGCCCmCy-- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0 0
MA0741.1_shift4 (KLF16)				; oligos_7nt_mkv5_m18 versus MA0741.1 (KLF16); m=12/25; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.521697; ----gmCMCgCCCMC--- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0
MA1513.1_shift4 (KLF15)				; oligos_7nt_mkv5_m18 versus MA1513.1 (KLF15); m=13/25; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.520451; ----scCCCGCCCcs--- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0
MA0516.2_shift0 (SP2)				; oligos_7nt_mkv5_m18 versus MA0516.2 (SP2); m=14/25; ncol2=17; w=11; offset=-6; strand=D; shift=0; score=0.480588; mTAAGyCCCGCCCmCyy- ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0 0
MA0079.4_shift1 (SP1)				; oligos_7nt_mkv5_m18 versus MA0079.4 (SP1); m=15/25; ncol2=15; w=10; offset=-5; strand=D; shift=1; score=0.474044; -ywrRCCACGCCCmCh-- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0 0
MA1516.1_shift3 (KLF3)				; oligos_7nt_mkv5_m18 versus MA1516.1 (KLF3); m=16/25; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.463918; ---grCCrCGCCCw---- ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0 0
MA1515.1_shift3 (KLF2)				; oligos_7nt_mkv5_m18 versus MA1515.1 (KLF2); m=17/25; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.461916; ---srCCmCrCCCw---- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0 0
MA0599.1_shift4 (KLF5)				; oligos_7nt_mkv5_m18 versus MA0599.1 (KLF5); m=18/25; ncol2=10; w=8; offset=-2; strand=D; shift=4; score=0.460699; ----gCCMCrCCCh---- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0 0
MA1511.1_shift4 (KLF10)				; oligos_7nt_mkv5_m18 versus MA1511.1 (KLF10); m=19/25; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.459932; ----gmCACrCCCmy--- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0
MA0006.1_rc_shift12 (Ahr::Arnt_rc)				; oligos_7nt_mkv5_m18 versus MA0006.1_rc (Ahr::Arnt_rc); m=20/25; ncol2=6; w=6; offset=6; strand=R; shift=12; score=0.451663; ------------CACGCr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 c 0 0 0 0 0 0 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 g 0 0 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 t 0 0 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0
MA1517.1_shift3 (KLF6)				; oligos_7nt_mkv5_m18 versus MA1517.1 (KLF6); m=21/25; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.450745; ---srcCACRCCCm---- ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0 0
MA0259.1_rc_shift11 (ARNT::HIF1A_rc)				; oligos_7nt_mkv5_m18 versus MA0259.1_rc (ARNT::HIF1A_rc); m=22/25; ncol2=8; w=7; offset=5; strand=R; shift=11; score=0.427511; -----------gCACGTv ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 15.0 0.0 104.0 0.0 1.0 1.0 31.0 c 0 0 0 0 0 0 0 0 0 0 0 20.0 104.0 0.0 104.0 0.0 23.0 34.0 g 0 0 0 0 0 0 0 0 0 0 0 51.0 0.0 0.0 0.0 103.0 2.0 29.0 t 0 0 0 0 0 0 0 0 0 0 0 18.0 0.0 0.0 0.0 0.0 78.0 10.0
MA1099.2_rc_shift10 (HES1_rc)				; oligos_7nt_mkv5_m18 versus MA1099.2_rc (HES1_rc); m=23/25; ncol2=10; w=8; offset=4; strand=R; shift=10; score=0.417488; ----------gvCACGyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 3216.0 4837.0 53.0 18526.0 0.0 791.0 232.0 18.0 c 0 0 0 0 0 0 0 0 0 0 6013.0 6360.0 18526.0 0.0 18526.0 0.0 9081.0 0.0 g 0 0 0 0 0 0 0 0 0 0 12513.0 6203.0 0.0 4057.0 0.0 18526.0 0.0 18526.0 t 0 0 0 0 0 0 0 0 0 0 2742.0 1126.0 1.0 253.0 21.0 0.0 9446.0 464.0
MA0004.1_rc_shift12 (Arnt_rc)				; oligos_7nt_mkv5_m18 versus MA0004.1_rc (Arnt_rc); m=24/25; ncol2=6; w=6; offset=6; strand=R; shift=12; score=0.407348; ------------CACGTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0.0 20.0 0.0 0.0 0.0 0.0 c 0 0 0 0 0 0 0 0 0 0 0 0 20.0 0.0 20.0 0.0 1.0 0.0 g 0 0 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 20.0 0.0 16.0 t 0 0 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 19.0 4.0
MA0471.2_rc_shift2 (E2F6_rc)				; oligos_7nt_mkv5_m18 versus MA0471.2_rc (E2F6_rc); m=25/25; ncol2=13; w=9; offset=-4; strand=R; shift=2; score=0.402033; --syTTCCCGCCyyc--- ; cor=; Ncor= a 0 0 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 0 0 c 0 0 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 0 0 g 0 0 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 0 0 t 0 0 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0 0 0