One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m2_shift0 (oligos_7nt_mkv5_m2oligos_7nt_mkv5_m2) |
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; oligos_7nt_mkv5_m2 (oligos_7nt_mkv5_m2oligos_7nt_mkv5_m2); m=0 (reference); ncol1=11; shift=0; ncol=11; ssCCAGCTCys
; Alignment reference
a 578 482 0 0 3445 0 0 0 0 802 622
c 1114 1183 3445 3443 0 0 3445 0 3445 1293 975
g 945 1015 0 2 0 3445 0 0 0 331 1170
t 808 765 0 0 0 0 0 3445 0 1019 678
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| MA1635.1_shift1 (BHLHE22(var.2)) |
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; oligos_7nt_mkv5_m2 versus MA1635.1 (BHLHE22(var.2)); m=1/1; ncol2=10; w=10; offset=1; strand=D; shift=1; score=0.652679; -csCAGCTGsg
; cor=; Ncor=
a 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0
c 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0
g 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0
t 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0
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