Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m24/peak-motifs_oligos_7nt_mkv5_m24.tf
		file1	1	11	6130
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m24 MA1655.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 ZNF341 0.814 0.746 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv5_m24 MA0832.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 Tcf21 0.943 0.741 11 14 11 14 0.7857 1.0000 0.7857 D 0
oligos_7nt_mkv5_m24 MA0091.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 TAL1::TCF3 0.797 0.731 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv5_m24 MA1467.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 ATOH1(var.2) 0.945 0.709 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m24 MA0665.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 MSC 0.945 0.708 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_7nt_mkv5_m24 MA0691.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 TFAP4 0.939 0.704 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m24 MA1641.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 MYF5 0.902 0.694 11 12 10 13 0.7692 0.9091 0.8333 D 1
oligos_7nt_mkv5_m24 MA1619.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 Ptf1a(var.2) 0.893 0.687 11 12 10 13 0.7692 0.9091 0.8333 D 1
oligos_7nt_mkv5_m24 MA0816.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 Ascl2 0.909 0.682 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m24 MA0500.2 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 MYOG 0.879 0.676 11 12 10 13 0.7692 0.9091 0.8333 R 1
oligos_7nt_mkv5_m24 MA0667.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 MYF6 0.898 0.674 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m24 MA0521.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 Tcf12 0.803 0.669 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_7nt_mkv5_m24 MA1618.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 Ptf1a 0.791 0.669 11 13 11 13 0.8462 1.0000 0.8462 R 0
oligos_7nt_mkv5_m24 MA0499.2 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 MYOD1 0.790 0.668 11 13 11 13 0.8462 1.0000 0.8462 R 0
oligos_7nt_mkv5_m24 MA1472.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 BHLHA15(var.2) 0.890 0.667 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m24 MA1485.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 FERD3L 0.841 0.661 11 14 11 14 0.7857 1.0000 0.7857 R 0
oligos_7nt_mkv5_m24 MA1635.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 BHLHE22(var.2) 0.841 0.631 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m24 MA0745.2 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 SNAI2 0.717 0.607 11 13 11 13 0.8462 1.0000 0.8462 R 0
oligos_7nt_mkv5_m24 MA1100.2 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 ASCL1 0.806 0.604 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m24 MA0048.2 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 NHLH1 0.783 0.587 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_7nt_mkv5_m24 MA0820.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 FIGLA 0.780 0.585 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_7nt_mkv5_m24 MA1621.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 Rbpjl 0.744 0.584 11 14 11 14 0.7857 1.0000 0.7857 D 0
oligos_7nt_mkv5_m24 MA1620.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 Ptf1a(var.3) 0.744 0.572 11 12 10 13 0.7692 0.9091 0.8333 D 1
oligos_7nt_mkv5_m24 MA0698.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 ZBTB18 0.787 0.562 11 13 10 14 0.7143 0.9091 0.7692 R 1
oligos_7nt_mkv5_m24 MA1559.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 SNAI3 0.745 0.559 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m24 MA1593.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 ZNF317 0.712 0.548 11 12 10 13 0.7692 0.9091 0.8333 D 1
oligos_7nt_mkv5_m24 MA0796.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 TGIF1 0.700 0.539 11 12 10 13 0.7692 0.9091 0.8333 R 1
oligos_7nt_mkv5_m24 MA0744.2 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 SCRT2 0.757 0.521 11 16 11 16 0.6875 1.0000 0.6875 D -3
oligos_7nt_mkv5_m24 MA0743.2 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 SCRT1 0.749 0.515 11 16 11 16 0.6875 1.0000 0.6875 D -3
oligos_7nt_mkv5_m24 MA1123.2 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 TWIST1 0.717 0.512 11 13 10 14 0.7143 0.9091 0.7692 R 1
oligos_7nt_mkv5_m24 MA1647.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 PRDM4 0.715 0.495 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_7nt_mkv5_m24 MA1529.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 NHLH2 0.723 0.442 11 18 11 18 0.6111 1.0000 0.6111 D -2
oligos_7nt_mkv5_m24 MA0111.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 Spz1 0.727 0.415 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_7nt_mkv5_m24 MA0848.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 FOXO4 0.812 0.406 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m24 MA0849.1 oligos_7nt_mkv5_m24oligos_7nt_mkv5_m24 FOXO6 0.803 0.401 11 7 6 12 0.5000 0.5455 0.8571 D -1 
 Host name	pedagogix
 Job started	2020-04-14.155035
 Job done	2020-04-14.155115
 Seconds	5.9
	user	5.9
	system	0.66
	cuser	32.81
;	csystem	1.73