One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m25/peak-motifs_oligos_7nt_mkv5_m25.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m25/peak-motifs_oligos_7nt_mkv5_m25_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m25_shift5 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m25_shift5 (oligos_7nt_mkv5_m25oligos_7nt_mkv5_m25)
; oligos_7nt_mkv5_m25 (oligos_7nt_mkv5_m25oligos_7nt_mkv5_m25); m=0 (reference); ncol1=11; shift=5; ncol=16; -----scAGCCCCAss ; Alignment reference a 0 0 0 0 0 525 418 2511 2 0 0 0 0 2511 313 492 c 0 0 0 0 0 825 1284 0 0 2511 2506 2503 2505 0 779 993 g 0 0 0 0 0 682 596 0 2509 0 5 8 5 0 1144 665 t 0 0 0 0 0 479 213 0 0 0 0 0 1 0 275 361

MA0056.2_shift4 (MZF1)
; oligos_7nt_mkv5_m25 versus MA0056.2 (MZF1); m=1/6; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.619423; ----mwAATCCCCAch ; cor=; Ncor= a 0 0 0 0 2141.0 2477.0 5855.0 7149.0 106.0 100.0 135.0 111.0 117.0 6036.0 1693.0 2096.0 c 0 0 0 0 2260.0 1944.0 1016.0 426.0 56.0 7949.0 7939.0 7919.0 7673.0 611.0 3007.0 2078.0 g 0 0 0 0 1808.0 1543.0 999.0 385.0 98.0 100.0 54.0 58.0 83.0 484.0 1523.0 1482.0 t 0 0 0 0 2033.0 2278.0 372.0 282.0 7982.0 93.0 114.0 154.0 369.0 1111.0 2019.0 2586.0

MA1615.1_rc_shift4 (Plagl1_rc)
; oligos_7nt_mkv5_m25 versus MA1615.1_rc (Plagl1_rc); m=2/6; ncol2=13; w=11; offset=-1; strand=R; shift=4; score=0.605096; ----ssTGGCCCCags ; cor=; Ncor= a 0 0 0 0 2558.0 2590.0 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 1680.0 2834.0 c 0 0 0 0 4567.0 4852.0 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 3026.0 4030.0 g 0 0 0 0 3614.0 4618.0 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 7309.0 4401.0 t 0 0 0 0 3414.0 2093.0 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 2138.0 2888.0

MA1656.1_shift4 (ZNF449)
; oligos_7nt_mkv5_m25 versus MA1656.1 (ZNF449); m=3/6; ncol2=14; w=11; offset=-1; strand=D; shift=4; score=0.582536; ----cvaAGCCCAACc ; cor=; Ncor= a 0 0 0 0 1809.0 2104.0 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 c 0 0 0 0 2716.0 2320.0 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 g 0 0 0 0 1566.0 1921.0 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 t 0 0 0 0 1569.0 1315.0 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0

MA1599.1_shift0 (ZNF682)
; oligos_7nt_mkv5_m25 versus MA1599.1 (ZNF682); m=4/6; ncol2=16; w=11; offset=-5; strand=D; shift=0; score=0.569131; crGGCyAAGCCCCwrt ; cor=; Ncor= a 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 c 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 g 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 t 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0

MA0039.4_shift7 (KLF4)
; oligos_7nt_mkv5_m25 versus MA0039.4 (KLF4); m=5/6; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.472337; -------ssCCCCACC ; cor=; Ncor= a 0 0 0 0 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 c 0 0 0 0 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 g 0 0 0 0 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 t 0 0 0 0 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0

MA0599.1_shift8 (KLF5)
; oligos_7nt_mkv5_m25 versus MA0599.1 (KLF5); m=6/6; ncol2=10; w=8; offset=3; strand=D; shift=8; score=0.450856; --------gCCMCrCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 g 0 0 0 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 t 0 0 0 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m25_shift5 (oligos_7nt_mkv5_m25oligos_7nt_mkv5_m25)				; oligos_7nt_mkv5_m25 (oligos_7nt_mkv5_m25oligos_7nt_mkv5_m25); m=0 (reference); ncol1=11; shift=5; ncol=16; -----scAGCCCCAss ; Alignment reference a 0 0 0 0 0 525 418 2511 2 0 0 0 0 2511 313 492 c 0 0 0 0 0 825 1284 0 0 2511 2506 2503 2505 0 779 993 g 0 0 0 0 0 682 596 0 2509 0 5 8 5 0 1144 665 t 0 0 0 0 0 479 213 0 0 0 0 0 1 0 275 361
MA0056.2_shift4 (MZF1)				; oligos_7nt_mkv5_m25 versus MA0056.2 (MZF1); m=1/6; ncol2=13; w=11; offset=-1; strand=D; shift=4; score=0.619423; ----mwAATCCCCAch ; cor=; Ncor= a 0 0 0 0 2141.0 2477.0 5855.0 7149.0 106.0 100.0 135.0 111.0 117.0 6036.0 1693.0 2096.0 c 0 0 0 0 2260.0 1944.0 1016.0 426.0 56.0 7949.0 7939.0 7919.0 7673.0 611.0 3007.0 2078.0 g 0 0 0 0 1808.0 1543.0 999.0 385.0 98.0 100.0 54.0 58.0 83.0 484.0 1523.0 1482.0 t 0 0 0 0 2033.0 2278.0 372.0 282.0 7982.0 93.0 114.0 154.0 369.0 1111.0 2019.0 2586.0
MA1615.1_rc_shift4 (Plagl1_rc)				; oligos_7nt_mkv5_m25 versus MA1615.1_rc (Plagl1_rc); m=2/6; ncol2=13; w=11; offset=-1; strand=R; shift=4; score=0.605096; ----ssTGGCCCCags ; cor=; Ncor= a 0 0 0 0 2558.0 2590.0 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 1680.0 2834.0 c 0 0 0 0 4567.0 4852.0 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 3026.0 4030.0 g 0 0 0 0 3614.0 4618.0 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 7309.0 4401.0 t 0 0 0 0 3414.0 2093.0 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 2138.0 2888.0
MA1656.1_shift4 (ZNF449)				; oligos_7nt_mkv5_m25 versus MA1656.1 (ZNF449); m=3/6; ncol2=14; w=11; offset=-1; strand=D; shift=4; score=0.582536; ----cvaAGCCCAACc ; cor=; Ncor= a 0 0 0 0 1809.0 2104.0 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 c 0 0 0 0 2716.0 2320.0 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 g 0 0 0 0 1566.0 1921.0 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 t 0 0 0 0 1569.0 1315.0 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0
MA1599.1_shift0 (ZNF682)				; oligos_7nt_mkv5_m25 versus MA1599.1 (ZNF682); m=4/6; ncol2=16; w=11; offset=-5; strand=D; shift=0; score=0.569131; crGGCyAAGCCCCwrt ; cor=; Ncor= a 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 c 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 g 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 t 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0
MA0039.4_shift7 (KLF4)				; oligos_7nt_mkv5_m25 versus MA0039.4 (KLF4); m=5/6; ncol2=12; w=9; offset=2; strand=D; shift=7; score=0.472337; -------ssCCCCACC ; cor=; Ncor= a 0 0 0 0 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 c 0 0 0 0 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 g 0 0 0 0 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 t 0 0 0 0 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0
MA0599.1_shift8 (KLF5)				; oligos_7nt_mkv5_m25 versus MA0599.1 (KLF5); m=6/6; ncol2=10; w=8; offset=3; strand=D; shift=8; score=0.450856; --------gCCMCrCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 g 0 0 0 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 t 0 0 0 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0