Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m27/peak-motifs_oligos_7nt_mkv5_m27.tf
		file1	1	13	4789
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m27 MA0746.2 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 SP3 0.814 0.814 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m27 MA0493.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 Klf1 0.943 0.798 13 11 11 13 0.8462 0.8462 1.0000 D 0
oligos_7nt_mkv5_m27 MA1107.2 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 KLF9 0.948 0.771 13 16 13 16 0.8125 1.0000 0.8125 D -1
oligos_7nt_mkv5_m27 MA0039.4 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 KLF4 0.830 0.766 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_7nt_mkv5_m27 MA0747.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 SP8 0.824 0.761 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_7nt_mkv5_m27 MA1511.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 KLF10 0.897 0.759 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_7nt_mkv5_m27 MA1515.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 KLF2 0.884 0.748 13 11 11 13 0.8462 0.8462 1.0000 D 0
oligos_7nt_mkv5_m27 MA1517.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 KLF6 0.879 0.743 13 11 11 13 0.8462 0.8462 1.0000 D 0
oligos_7nt_mkv5_m27 MA1564.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 SP9 0.794 0.733 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_7nt_mkv5_m27 MA1512.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 KLF11 0.848 0.718 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_7nt_mkv5_m27 MA0742.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 Klf12 0.801 0.694 13 15 13 15 0.8667 1.0000 0.8667 D 0
oligos_7nt_mkv5_m27 MA0740.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 KLF14 0.747 0.694 13 14 13 14 0.9286 1.0000 0.9286 D 0
oligos_7nt_mkv5_m27 MA0741.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 KLF16 0.794 0.672 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_7nt_mkv5_m27 MA0079.4 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 SP1 0.775 0.672 13 15 13 15 0.8667 1.0000 0.8667 D -2
oligos_7nt_mkv5_m27 MA1516.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 KLF3 0.784 0.663 13 11 11 13 0.8462 0.8462 1.0000 D 0
oligos_7nt_mkv5_m27 MA0599.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 KLF5 0.806 0.620 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv5_m27 MA0685.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 SP4 0.741 0.567 13 17 13 17 0.7647 1.0000 0.7647 D -2
oligos_7nt_mkv5_m27 MA0162.4 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 EGR1 0.730 0.502 13 14 11 16 0.6875 0.8462 0.7857 D 2
oligos_7nt_mkv5_m27 MA0130.1 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 ZNF354C 0.923 0.426 13 6 6 13 0.4615 0.4615 1.0000 D 0
oligos_7nt_mkv5_m27 MA0472.2 oligos_7nt_mkv5_m27oligos_7nt_mkv5_m27 EGR2 0.707 0.424 13 11 9 15 0.6000 0.6923 0.8182 D 4 
 Host name	pedagogix
 Job started	2020-04-14.155133
 Job done	2020-04-14.155158
 Seconds	4.72
	user	4.72
	system	0.4
	cuser	18.73
;	csystem	1.13