One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m30/peak-motifs_oligos_7nt_mkv5_m30.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m30/peak-motifs_oligos_7nt_mkv5_m30_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m30_shift6 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m30_shift6 (oligos_7nt_mkv5_m30oligos_7nt_mkv5_m30)
; oligos_7nt_mkv5_m30 (oligos_7nt_mkv5_m30oligos_7nt_mkv5_m30); m=0 (reference); ncol1=11; shift=6; ncol=20; ------scCACCACChs--- ; Alignment reference a 0 0 0 0 0 0 578 460 3 2471 0 0 2471 0 0 790 447 0 0 0 c 0 0 0 0 0 0 741 990 2455 0 2475 2443 0 2475 2471 695 840 0 0 0 g 0 0 0 0 0 0 764 491 6 4 0 25 4 0 4 322 790 0 0 0 t 0 0 0 0 0 0 392 534 11 0 0 7 0 0 0 668 398 0 0 0

MA0695.1_shift6 (ZBTB7C)
; oligos_7nt_mkv5_m30 versus MA0695.1 (ZBTB7C); m=1/7; ncol2=12; w=11; offset=0; strand=D; shift=6; score=0.726895; ------rcgACCACCgam-- ; cor=; Ncor= a 0 0 0 0 0 0 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 0 0 c 0 0 0 0 0 0 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 0 0 g 0 0 0 0 0 0 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 0 0 t 0 0 0 0 0 0 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0 0 0

MA0039.4_shift6 (KLF4)
; oligos_7nt_mkv5_m30 versus MA0039.4 (KLF4); m=2/7; ncol2=12; w=11; offset=0; strand=D; shift=6; score=0.686141; ------ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA0694.1_shift6 (ZBTB7B)
; oligos_7nt_mkv5_m30 versus MA0694.1 (ZBTB7B); m=3/7; ncol2=12; w=11; offset=0; strand=D; shift=6; score=0.677363; ------rCGACCMCCgaa-- ; cor=; Ncor= a 0 0 0 0 0 0 533.0 144.0 394.0 1852.0 5.0 0.0 1852.0 5.0 0.0 803.0 1852.0 996.0 0 0 c 0 0 0 0 0 0 159.0 1852.0 19.0 238.0 1852.0 1852.0 820.0 1852.0 1852.0 474.0 295.0 309.0 0 0 g 0 0 0 0 0 0 795.0 224.0 1852.0 0.0 1.0 2.0 2.0 0.0 0.0 1852.0 221.0 245.0 0 0 t 0 0 0 0 0 0 365.0 54.0 78.0 3.0 0.0 0.0 3.0 1.0 7.0 305.0 365.0 302.0 0 0

MA0820.1_shift9 (FIGLA)
; oligos_7nt_mkv5_m30 versus MA0820.1 (FIGLA); m=4/7; ncol2=10; w=8; offset=3; strand=D; shift=9; score=0.452053; ---------wmCACCTGkw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 c 0 0 0 0 0 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 g 0 0 0 0 0 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 t 0 0 0 0 0 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0

MA0130.1_shift8 (ZNF354C)
; oligos_7nt_mkv5_m30 versus MA0130.1 (ZNF354C); m=5/7; ncol2=6; w=6; offset=2; strand=D; shift=8; score=0.426239; --------mTCCAC------ ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0

MA0073.1_shift0 (RREB1)
; oligos_7nt_mkv5_m30 versus MA0073.1 (RREB1); m=6/7; ncol2=20; w=11; offset=-6; strand=D; shift=0; score=0.414205; MCMCmAMmCAmCMmCmmmsm ; cor=; Ncor= a 3.0 1.0 3.0 0.0 7.0 9.0 8.0 4.0 0.0 11.0 4.0 1.0 3.0 4.0 2.0 4.0 4.0 4.0 1.0 4.0 c 8.0 10.0 8.0 11.0 4.0 2.0 3.0 6.0 11.0 0.0 7.0 10.0 8.0 6.0 9.0 5.0 5.0 6.0 7.0 4.0 g 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 3.0 2.0 t 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.0 1.0 0.0 1.0

MA0807.1_rc_shift5 (TBX5_rc)
; oligos_7nt_mkv5_m30 versus MA0807.1_rc (TBX5_rc); m=7/7; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=0.411341; -----TmACACCT------- ; cor=; Ncor= a 0 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 c 0 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 g 0 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m30_shift6 (oligos_7nt_mkv5_m30oligos_7nt_mkv5_m30)				; oligos_7nt_mkv5_m30 (oligos_7nt_mkv5_m30oligos_7nt_mkv5_m30); m=0 (reference); ncol1=11; shift=6; ncol=20; ------scCACCACChs--- ; Alignment reference a 0 0 0 0 0 0 578 460 3 2471 0 0 2471 0 0 790 447 0 0 0 c 0 0 0 0 0 0 741 990 2455 0 2475 2443 0 2475 2471 695 840 0 0 0 g 0 0 0 0 0 0 764 491 6 4 0 25 4 0 4 322 790 0 0 0 t 0 0 0 0 0 0 392 534 11 0 0 7 0 0 0 668 398 0 0 0
MA0695.1_shift6 (ZBTB7C)				; oligos_7nt_mkv5_m30 versus MA0695.1 (ZBTB7C); m=1/7; ncol2=12; w=11; offset=0; strand=D; shift=6; score=0.726895; ------rcgACCACCgam-- ; cor=; Ncor= a 0 0 0 0 0 0 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 0 0 c 0 0 0 0 0 0 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 0 0 g 0 0 0 0 0 0 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 0 0 t 0 0 0 0 0 0 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0 0 0
MA0039.4_shift6 (KLF4)				; oligos_7nt_mkv5_m30 versus MA0039.4 (KLF4); m=2/7; ncol2=12; w=11; offset=0; strand=D; shift=6; score=0.686141; ------ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0
MA0694.1_shift6 (ZBTB7B)				; oligos_7nt_mkv5_m30 versus MA0694.1 (ZBTB7B); m=3/7; ncol2=12; w=11; offset=0; strand=D; shift=6; score=0.677363; ------rCGACCMCCgaa-- ; cor=; Ncor= a 0 0 0 0 0 0 533.0 144.0 394.0 1852.0 5.0 0.0 1852.0 5.0 0.0 803.0 1852.0 996.0 0 0 c 0 0 0 0 0 0 159.0 1852.0 19.0 238.0 1852.0 1852.0 820.0 1852.0 1852.0 474.0 295.0 309.0 0 0 g 0 0 0 0 0 0 795.0 224.0 1852.0 0.0 1.0 2.0 2.0 0.0 0.0 1852.0 221.0 245.0 0 0 t 0 0 0 0 0 0 365.0 54.0 78.0 3.0 0.0 0.0 3.0 1.0 7.0 305.0 365.0 302.0 0 0
MA0820.1_shift9 (FIGLA)				; oligos_7nt_mkv5_m30 versus MA0820.1 (FIGLA); m=4/7; ncol2=10; w=8; offset=3; strand=D; shift=9; score=0.452053; ---------wmCACCTGkw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 c 0 0 0 0 0 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 g 0 0 0 0 0 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 t 0 0 0 0 0 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0
MA0130.1_shift8 (ZNF354C)				; oligos_7nt_mkv5_m30 versus MA0130.1 (ZNF354C); m=5/7; ncol2=6; w=6; offset=2; strand=D; shift=8; score=0.426239; --------mTCCAC------ ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0
MA0073.1_shift0 (RREB1)				; oligos_7nt_mkv5_m30 versus MA0073.1 (RREB1); m=6/7; ncol2=20; w=11; offset=-6; strand=D; shift=0; score=0.414205; MCMCmAMmCAmCMmCmmmsm ; cor=; Ncor= a 3.0 1.0 3.0 0.0 7.0 9.0 8.0 4.0 0.0 11.0 4.0 1.0 3.0 4.0 2.0 4.0 4.0 4.0 1.0 4.0 c 8.0 10.0 8.0 11.0 4.0 2.0 3.0 6.0 11.0 0.0 7.0 10.0 8.0 6.0 9.0 5.0 5.0 6.0 7.0 4.0 g 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 3.0 2.0 t 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.0 1.0 0.0 1.0
MA0807.1_rc_shift5 (TBX5_rc)				; oligos_7nt_mkv5_m30 versus MA0807.1_rc (TBX5_rc); m=7/7; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=0.411341; -----TmACACCT------- ; cor=; Ncor= a 0 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 0 0 0 0 c 0 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 0 0 0 0 g 0 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0 0 0 0 0