One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m31/peak-motifs_oligos_7nt_mkv5_m31.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m31/peak-motifs_oligos_7nt_mkv5_m31_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m31_shift6 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m31_shift6 (oligos_7nt_mkv5_m31oligos_7nt_mkv5_m31)
; oligos_7nt_mkv5_m31 (oligos_7nt_mkv5_m31oligos_7nt_mkv5_m31); m=0 (reference); ncol1=11; shift=6; ncol=17; ------ssCGGGACGss ; Alignment reference a 0 0 0 0 0 0 191 227 9 0 22 66 1673 0 7 170 252 c 0 0 0 0 0 0 812 609 1732 128 382 21 58 1814 44 909 503 g 0 0 0 0 0 0 560 791 73 1689 1303 1655 57 0 1759 468 872 t 0 0 0 0 0 0 254 190 3 0 110 75 29 3 7 270 190

MA1122.1_shift5 (TFDP1)
; oligos_7nt_mkv5_m31 versus MA1122.1 (TFDP1); m=1/3; ncol2=11; w=10; offset=-1; strand=D; shift=5; score=0.586942; -----gsGCGGGAAss- ; cor=; Ncor= a 0 0 0 0 0 411.0 263.0 48.0 28.0 14.0 36.0 27.0 1855.0 1645.0 465.0 381.0 0 c 0 0 0 0 0 491.0 684.0 71.0 1886.0 54.0 80.0 32.0 24.0 170.0 647.0 604.0 0 g 0 0 0 0 0 777.0 940.0 1862.0 22.0 1932.0 1865.0 1919.0 98.0 137.0 648.0 648.0 0 t 0 0 0 0 0 328.0 120.0 26.0 71.0 7.0 26.0 29.0 30.0 55.0 247.0 374.0 0

MA1546.1_rc_shift0 (PAX3(var.2)_rc)
; oligos_7nt_mkv5_m31 versus MA1546.1_rc (PAX3(var.2)_rc); m=2/3; ncol2=16; w=10; offset=-6; strand=R; shift=0; score=0.429907; yTAATwrsCGTGACsr- ; cor=; Ncor= a 266.0 215.0 1344.0 1344.0 86.0 467.0 606.0 6.0 0.0 201.0 2.0 263.0 1344.0 126.0 167.0 411.0 0 c 363.0 108.0 52.0 24.0 353.0 138.0 127.0 508.0 1344.0 2.0 19.0 23.0 6.0 1344.0 464.0 216.0 0 g 326.0 66.0 138.0 43.0 152.0 228.0 414.0 836.0 1.0 1344.0 2.0 1344.0 79.0 2.0 880.0 515.0 0 t 390.0 1344.0 83.0 50.0 1344.0 512.0 197.0 3.0 161.0 13.0 1344.0 9.0 181.0 1.0 112.0 203.0 0

MA1513.1_rc_shift3 (KLF15_rc)
; oligos_7nt_mkv5_m31 versus MA1513.1_rc (KLF15_rc); m=3/3; ncol2=11; w=8; offset=-3; strand=R; shift=3; score=0.402659; ---sgGGGCGGGgs--- ; cor=; Ncor= a 0 0 0 2165.0 1602.0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 1744.0 0 0 0 c 0 0 0 3124.0 1934.0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 5538.0 0 0 0 g 0 0 0 5013.0 6267.0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 2903.0 0 0 0 t 0 0 0 1067.0 1566.0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 1184.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m31_shift6 (oligos_7nt_mkv5_m31oligos_7nt_mkv5_m31)				; oligos_7nt_mkv5_m31 (oligos_7nt_mkv5_m31oligos_7nt_mkv5_m31); m=0 (reference); ncol1=11; shift=6; ncol=17; ------ssCGGGACGss ; Alignment reference a 0 0 0 0 0 0 191 227 9 0 22 66 1673 0 7 170 252 c 0 0 0 0 0 0 812 609 1732 128 382 21 58 1814 44 909 503 g 0 0 0 0 0 0 560 791 73 1689 1303 1655 57 0 1759 468 872 t 0 0 0 0 0 0 254 190 3 0 110 75 29 3 7 270 190
MA1122.1_shift5 (TFDP1)				; oligos_7nt_mkv5_m31 versus MA1122.1 (TFDP1); m=1/3; ncol2=11; w=10; offset=-1; strand=D; shift=5; score=0.586942; -----gsGCGGGAAss- ; cor=; Ncor= a 0 0 0 0 0 411.0 263.0 48.0 28.0 14.0 36.0 27.0 1855.0 1645.0 465.0 381.0 0 c 0 0 0 0 0 491.0 684.0 71.0 1886.0 54.0 80.0 32.0 24.0 170.0 647.0 604.0 0 g 0 0 0 0 0 777.0 940.0 1862.0 22.0 1932.0 1865.0 1919.0 98.0 137.0 648.0 648.0 0 t 0 0 0 0 0 328.0 120.0 26.0 71.0 7.0 26.0 29.0 30.0 55.0 247.0 374.0 0
MA1546.1_rc_shift0 (PAX3(var.2)_rc)				; oligos_7nt_mkv5_m31 versus MA1546.1_rc (PAX3(var.2)_rc); m=2/3; ncol2=16; w=10; offset=-6; strand=R; shift=0; score=0.429907; yTAATwrsCGTGACsr- ; cor=; Ncor= a 266.0 215.0 1344.0 1344.0 86.0 467.0 606.0 6.0 0.0 201.0 2.0 263.0 1344.0 126.0 167.0 411.0 0 c 363.0 108.0 52.0 24.0 353.0 138.0 127.0 508.0 1344.0 2.0 19.0 23.0 6.0 1344.0 464.0 216.0 0 g 326.0 66.0 138.0 43.0 152.0 228.0 414.0 836.0 1.0 1344.0 2.0 1344.0 79.0 2.0 880.0 515.0 0 t 390.0 1344.0 83.0 50.0 1344.0 512.0 197.0 3.0 161.0 13.0 1344.0 9.0 181.0 1.0 112.0 203.0 0
MA1513.1_rc_shift3 (KLF15_rc)				; oligos_7nt_mkv5_m31 versus MA1513.1_rc (KLF15_rc); m=3/3; ncol2=11; w=8; offset=-3; strand=R; shift=3; score=0.402659; ---sgGGGCGGGgs--- ; cor=; Ncor= a 0 0 0 2165.0 1602.0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 1744.0 0 0 0 c 0 0 0 3124.0 1934.0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 5538.0 0 0 0 g 0 0 0 5013.0 6267.0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 2903.0 0 0 0 t 0 0 0 1067.0 1566.0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 1184.0 0 0 0