One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m32/peak-motifs_oligos_7nt_mkv5_m32.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m32/peak-motifs_oligos_7nt_mkv5_m32_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m32_shift2 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m32_shift2 (oligos_7nt_mkv5_m32oligos_7nt_mkv5_m32) |
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; oligos_7nt_mkv5_m32 (oligos_7nt_mkv5_m32oligos_7nt_mkv5_m32); m=0 (reference); ncol1=11; shift=2; ncol=13; --ssAGCCGCAss
; Alignment reference
a 0 0 275 187 1345 7 3 0 0 5 1337 144 229
c 0 0 362 677 17 4 1360 1363 0 1336 0 391 534
g 0 0 547 392 4 1349 3 3 1366 6 29 721 402
t 0 0 182 110 0 6 0 0 0 19 0 110 201
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| MA1583.1_shift0 (ZFP57) |
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; oligos_7nt_mkv5_m32 versus MA1583.1 (ZFP57); m=1/1; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.638928; bsrtTGCCGCAsb
; cor=; Ncor=
a 1156.0 1553.0 2236.0 639.0 12.0 24.0 26.0 11.0 91.0 38.0 5116.0 1450.0 1351.0
c 1721.0 1611.0 1514.0 1061.0 37.0 71.0 6254.0 5595.0 16.0 5828.0 331.0 1699.0 1665.0
g 1829.0 1598.0 1643.0 1255.0 140.0 6213.0 16.0 719.0 6166.0 279.0 729.0 1896.0 1627.0
t 1626.0 1570.0 939.0 3377.0 6143.0 24.0 36.0 7.0 59.0 187.0 156.0 1287.0 1689.0
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