One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m34/peak-motifs_oligos_7nt_mkv5_m34.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m34/peak-motifs_oligos_7nt_mkv5_m34_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m34_shift6 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv5_m34_shift6 (oligos_7nt_mkv5_m34oligos_7nt_mkv5_m34)     
; oligos_7nt_mkv5_m34 (oligos_7nt_mkv5_m34oligos_7nt_mkv5_m34); m=0 (reference); ncol1=11; shift=6; ncol=17; ------ssCGGGGTCss
; Alignment reference
a	0	0	0	0	0	0	121	166	0	0	14	14	21	14	32	210	131
c	0	0	0	0	0	0	653	396	1480	44	241	265	0	0	1441	490	511
g	0	0	0	0	0	0	513	693	0	1436	1212	1189	1438	0	0	605	631
t	0	0	0	0	0	0	193	225	0	0	13	12	21	1466	7	175	207
MA1535.1_shift8 (NR2C1) 
; oligos_7nt_mkv5_m34 versus MA1535.1 (NR2C1); m=1/5; ncol2=9; w=9; offset=2; strand=D; shift=8; score=0.597553; --------mrrGGTCAy
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	2552.0	4035.0	4866.0	0.0	0.0	0.0	0.0	9622.0	2298.0
c	0	0	0	0	0	0	0	0	2848.0	1225.0	227.0	0.0	0.0	0.0	9622.0	0.0	2786.0
g	0	0	0	0	0	0	0	0	1997.0	5587.0	4756.0	9622.0	9622.0	271.0	321.0	1716.0	2039.0
t	0	0	0	0	0	0	0	0	2225.0	1316.0	55.0	297.0	0.0	9622.0	0.0	0.0	2499.0
MA1536.1_shift9 (NR2C2(var.2)) 
; oligos_7nt_mkv5_m34 versus MA1536.1 (NR2C2(var.2)); m=2/5; ncol2=8; w=8; offset=3; strand=D; shift=9; score=0.533856; ---------rrGGTCRh
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	6236.0	10232.0	0.0	0.0	0.0	0.0	18628.0	5065.0
c	0	0	0	0	0	0	0	0	0	3111.0	719.0	236.0	0.0	0.0	18628.0	0.0	4757.0
g	0	0	0	0	0	0	0	0	0	6420.0	8395.0	18628.0	18628.0	1588.0	1643.0	6639.0	3684.0
t	0	0	0	0	0	0	0	0	0	2861.0	0.0	1341.0	4790.0	18628.0	4406.0	0.0	5122.0
MA1516.1_rc_shift4 (KLF3_rc) 
; oligos_7nt_mkv5_m34 versus MA1516.1_rc (KLF3_rc); m=3/5; ncol2=11; w=9; offset=-2; strand=R; shift=4; score=0.489348; ----wGGGCGyGGyc--
; cor=; Ncor=
a	0	0	0	0	14617.0	1218.0	0.0	0.0	1212.0	1409.0	419.0	335.0	705.0	207.0	6319.0	0	0
c	0	0	0	0	1514.0	48.0	29.0	31.0	43259.0	21.0	16503.0	248.0	1954.0	18489.0	26568.0	0	0
g	0	0	0	0	10099.0	43259.0	43259.0	43259.0	334.0	43259.0	707.0	43259.0	43259.0	615.0	2655.0	0	0
t	0	0	0	0	17029.0	77.0	83.0	202.0	4245.0	2261.0	26757.0	298.0	1442.0	24771.0	7717.0	0	0
MA1584.1_rc_shift0 (ZIC5_rc) 
; oligos_7nt_mkv5_m34 versus MA1584.1_rc (ZIC5_rc); m=4/5; ncol2=16; w=10; offset=-6; strand=R; shift=0; score=0.414485; kCrCaGCGGGGGGTck-
; cor=; Ncor=
a	5356.0	2756.0	10267.0	2.0	18007.0	5843.0	23.0	3577.0	2.0	1.0	328.0	57.0	17.0	0.0	5687.0	3106.0	0
c	792.0	19961.0	1725.0	21153.0	3252.0	235.0	20412.0	0.0	2.0	0.0	470.0	58.0	0.0	2765.0	17329.0	5212.0	0
g	11606.0	1733.0	9445.0	8.0	3844.0	19607.0	21.0	17685.0	21235.0	21263.0	20221.0	21163.0	21201.0	2320.0	3318.0	6877.0	0
t	8073.0	52.0	5255.0	251.0	2536.0	2.0	2110.0	10.0	67.0	5.0	1311.0	147.0	250.0	19266.0	555.0	6068.0	0
MA1513.1_rc_shift3 (KLF15_rc) 
; oligos_7nt_mkv5_m34 versus MA1513.1_rc (KLF15_rc); m=5/5; ncol2=11; w=8; offset=-3; strand=R; shift=3; score=0.411319; ---sgGGGCGGGgs---
; cor=; Ncor=
a	0	0	0	2165.0	1602.0	3.0	1.0	11.0	0.0	0.0	3.0	9.0	1809.0	1744.0	0	0	0
c	0	0	0	3124.0	1934.0	100.0	359.0	2.0	11369.0	1.0	333.0	86.0	2117.0	5538.0	0	0	0
g	0	0	0	5013.0	6267.0	11254.0	10954.0	11345.0	0.0	11368.0	10940.0	11234.0	6506.0	2903.0	0	0	0
t	0	0	0	1067.0	1566.0	12.0	55.0	11.0	0.0	0.0	93.0	40.0	937.0	1184.0	0	0	0