One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m36/peak-motifs_oligos_7nt_mkv5_m36.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m36/peak-motifs_oligos_7nt_mkv5_m36_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m36_shift2 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv5_m36_shift2 (oligos_7nt_mkv5_m36oligos_7nt_mkv5_m36)     
; oligos_7nt_mkv5_m36 (oligos_7nt_mkv5_m36oligos_7nt_mkv5_m36); m=0 (reference); ncol1=12; shift=2; ncol=16; --sgCGGyGGCGss--
; Alignment reference
a	0	0	521	541	41	11	107	184	97	169	41	12	518	518	0	0
c	0	0	1426	993	4220	193	101	1570	162	177	4274	205	1295	1782	0	0
g	0	0	1952	2354	118	4199	4151	377	4079	3955	68	4164	2087	1538	0	0
t	0	0	510	521	30	6	50	2278	71	108	26	28	509	571	0	0
MA0162.4_rc_shift1 (EGR1_rc) 
; oligos_7nt_mkv5_m36 versus MA0162.4_rc (EGR1_rc); m=1/5; ncol2=14; w=12; offset=-1; strand=R; shift=1; score=0.606597; -skGcGTGGGCGkgg-
; cor=; Ncor=
a	0	5251.0	4909.0	2276.0	2552.0	239.0	759.0	628.0	382.0	368.0	2120.0	797.0	1933.0	4641.0	5280.0	0
c	0	7852.0	6345.0	2157.0	20544.0	699.0	2122.0	698.0	1455.0	665.0	22237.0	756.0	3854.0	7211.0	6621.0	0
g	0	13686.0	10441.0	25196.0	2806.0	29507.0	5420.0	28958.0	27321.0	29338.0	1131.0	28403.0	10303.0	14749.0	11610.0	0
t	0	3809.0	8903.0	969.0	4696.0	153.0	22297.0	314.0	1440.0	227.0	5110.0	642.0	14508.0	3997.0	7087.0	0
MA0732.1_rc_shift0 (EGR3_rc) 
; oligos_7nt_mkv5_m36 versus MA0732.1_rc (EGR3_rc); m=2/5; ncol2=15; w=12; offset=-2; strand=R; shift=0; score=0.562101; arTGCGKGGGCGkdr-
; cor=; Ncor=
a	683.0	549.0	80.0	21.0	26.0	2.0	4.0	80.0	10.0	0.0	36.0	13.0	20.0	540.0	470.0	0
c	230.0	110.0	168.0	1.0	2152.0	7.0	11.0	7.0	0.0	2.0	2158.0	0.0	10.0	191.0	278.0	0
g	346.0	600.0	54.0	1899.0	28.0	1875.0	455.0	1823.0	1858.0	1856.0	32.0	1855.0	701.0	485.0	645.0	0
t	396.0	406.0	1262.0	2.0	39.0	0.0	1159.0	0.0	0.0	0.0	66.0	2.0	1031.0	444.0	337.0	0
MA0741.1_rc_shift5 (KLF16_rc) 
; oligos_7nt_mkv5_m36 versus MA0741.1_rc (KLF16_rc); m=3/5; ncol2=11; w=9; offset=3; strand=R; shift=5; score=0.459783; -----GKGGGcGKGkc
; cor=; Ncor=
a	0	0	0	0	0	370.0	40.0	97.0	0.0	0.0	403.0	19.0	0.0	45.0	116.0	240.0
c	0	0	0	0	0	23.0	19.0	3.0	8.0	0.0	1612.0	17.0	32.0	6.0	77.0	1612.0
g	0	0	0	0	0	1612.0	1175.0	1612.0	1612.0	1612.0	173.0	1612.0	461.0	1612.0	1612.0	535.0
t	0	0	0	0	0	32.0	437.0	16.0	2.0	8.0	497.0	66.0	1150.0	62.0	901.0	666.0
MA1513.1_rc_shift5 (KLF15_rc) 
; oligos_7nt_mkv5_m36 versus MA1513.1_rc (KLF15_rc); m=4/5; ncol2=11; w=9; offset=3; strand=R; shift=5; score=0.459204; -----sgGGGCGGGgs
; cor=; Ncor=
a	0	0	0	0	0	2165.0	1602.0	3.0	1.0	11.0	0.0	0.0	3.0	9.0	1809.0	1744.0
c	0	0	0	0	0	3124.0	1934.0	100.0	359.0	2.0	11369.0	1.0	333.0	86.0	2117.0	5538.0
g	0	0	0	0	0	5013.0	6267.0	11254.0	10954.0	11345.0	0.0	11368.0	10940.0	11234.0	6506.0	2903.0
t	0	0	0	0	0	1067.0	1566.0	12.0	55.0	11.0	0.0	0.0	93.0	40.0	937.0	1184.0
MA0471.2_shift5 (E2F6) 
; oligos_7nt_mkv5_m36 versus MA0471.2 (E2F6); m=5/5; ncol2=13; w=9; offset=3; strand=D; shift=5; score=0.409384; -----grrGGCGGGAA
; cor=; Ncor=
a	0	0	0	0	0	7296.0	8379.0	9537.0	2110.0	266.0	3856.0	1173.0	338.0	354.0	29337.0	25725.0
c	0	0	0	0	0	8075.0	7405.0	5102.0	1148.0	837.0	26424.0	539.0	434.0	834.0	1171.0	1595.0
g	0	0	0	0	0	12358.0	11649.0	11562.0	29387.0	31790.0	693.0	30573.0	31973.0	31614.0	2322.0	5021.0
t	0	0	0	0	0	5369.0	5665.0	6897.0	453.0	205.0	2125.0	813.0	353.0	296.0	268.0	757.0