Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m38/peak-motifs_oligos_7nt_mkv5_m38.tf
		file1	1	11	1417
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m38 MA0476.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOS 0.835 0.835 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m38 MA1634.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 BATF 0.809 0.809 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m38 MA0462.2 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 BATF::JUN 0.804 0.804 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m38 MA0835.2 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 BATF3 0.789 0.789 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m38 MA1130.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOSL2::JUN 0.822 0.754 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv5_m38 MA1138.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOSL2::JUNB 0.829 0.753 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv5_m38 MA1142.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOSL1::JUND 0.827 0.752 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv5_m38 MA1135.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOSB::JUNB 0.821 0.746 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv5_m38 MA1134.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOS::JUNB 0.813 0.746 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv5_m38 MA1144.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOSL2::JUND 0.818 0.743 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv5_m38 MA0841.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 NFE2 0.743 0.743 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m38 MA0099.3 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOS::JUN 0.813 0.739 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv5_m38 MA1137.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOSL1::JUNB 0.816 0.690 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv5_m38 MA0477.2 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOSL1 0.804 0.681 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv5_m38 MA0478.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOSL2 0.814 0.678 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_7nt_mkv5_m38 MA1128.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOSL1::JUN 0.800 0.677 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv5_m38 MA1639.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 MEIS1(var.2) 0.796 0.674 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_7nt_mkv5_m38 MA1141.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 FOS::JUND 0.796 0.673 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_7nt_mkv5_m38 MA1113.2 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 PBX2 0.794 0.671 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_7nt_mkv5_m38 MA0491.2 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 JUND 0.793 0.671 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv5_m38 MA1132.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 JUN::JUNB 0.737 0.670 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv5_m38 MA0490.2 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 JUNB 0.792 0.670 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_mkv5_m38 MA0070.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 PBX1 0.730 0.669 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv5_m38 MA1622.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 Smad2::Smad3 0.829 0.651 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_7nt_mkv5_m38 MA0655.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 JDP2 0.765 0.626 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_7nt_mkv5_m38 MA1633.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 BACH1 0.740 0.626 11 13 11 13 0.8462 1.0000 0.8462 D 0
oligos_7nt_mkv5_m38 MA1640.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 MEIS2(var.2) 0.783 0.574 11 15 11 15 0.7333 1.0000 0.7333 R -3
oligos_7nt_mkv5_m38 MA0489.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 JUN(var.2) 0.834 0.556 11 14 10 15 0.6667 0.9091 0.7143 R 1
oligos_7nt_mkv5_m38 MA0496.3 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 MAFK 0.728 0.534 11 15 11 15 0.7333 1.0000 0.7333 D -1
oligos_7nt_mkv5_m38 MA0611.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 Dux 0.729 0.530 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv5_m38 MA0468.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 DUX4 0.750 0.520 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv5_m38 MA0884.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 DUXA 0.717 0.512 11 13 10 14 0.7143 0.9091 0.7692 D -3
oligos_7nt_mkv5_m38 MA0089.2 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 NFE2L1 0.703 0.484 11 16 11 16 0.6875 1.0000 0.6875 D -2
oligos_7nt_mkv5_m38 MA0038.2 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 GFI1 0.743 0.477 11 12 9 14 0.6429 0.8182 0.7500 D 2
oligos_7nt_mkv5_m38 MA0790.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 POU4F1 0.702 0.468 11 14 10 15 0.6667 0.9091 0.7143 D 1
oligos_7nt_mkv5_m38 MA1101.2 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 BACH2 0.748 0.433 11 19 11 19 0.5789 1.0000 0.5789 D -4
oligos_7nt_mkv5_m38 MA0483.1 oligos_7nt_mkv5_m38oligos_7nt_mkv5_m38 Gfi1b 0.743 0.424 11 11 8 14 0.5714 0.7273 0.7273 D 3 
 Host name	pedagogix
 Job started	2020-04-14.155358
 Job done	2020-04-14.155450
 Seconds	8.76
	user	8.76
	system	1.02
	cuser	40.6
;	csystem	2.09